1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...agctctttagatctgttcaatttttaaaattgcatttttctcacagttcaaaggttccaatttcttaggaggaatttatatattgcatcttattatgcagTTTAAGTCAGTTAGTACGTTGGTTGGGAGGGAAAGCTGAAGAATTAGGAGTAGAAATATATCCAGGCTTTGCCGCTAGTGAG
species | Vitis vinifera |
transcript | Vv05s0102g01110.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gttcaaaggttccaatttcttaggaggaatttatatattgcatcttattatgcagTTTAAGTCAGTTAGTACGTTGGTTGGGAGGGAAAGCTGAAGAATTAGGAGTAGAAATATATCCAGGCTTTGCCGCTAGTGAG
tcttatt CT-rich tract
aatttatatattgcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctctttagatctgttcaatttttaaaattgcatttttctcacagttcaaaggttccaatttcttaggaggaatttatatattgcatcttattatgcagTTTAAGTCAGTTAGTACGTTGGTTGGGAGGGAAAGCTGAAGAATTAGGAGTAGAAATATATCCAGGCTTTGCCGCTAGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - -aaaattg
- - - - - - - - - - - - - - - - - - - tctcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatct