1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaatgtcgctccctattgtatcttttcttcgtgttttaacactttgtttgcctcatacttataaatttaagctttccgttccaaagGTCAAGAATTTTCTTAAAGACAAAAGCACCCTGAAATCCAAGCCAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGG
species | Vitis vinifera |
transcript | Vv05s0094g01630.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGTTTAAGGGCATTGGGAATTGATGCATCTGATAGAATTTTGCAAGCG GTCAAGAATTTTCTTAAAGACAAAAGCACCCTGAAATCCAAGCCAGAATGGEST: gi|110372081|gb|EC936226.1|EC936226
genomic: CTGGTTTAAGGGCATTGGGAATTGATGCATCTGATAGAATTTTGCAAGCGgtaaatgtcg ... cgttccaaagGTCAAGAATTTTCTTAAAGACAAAAGCACCCTGAAATCCAAGCCAGAATGG
EST: TGATGCATCTGATAGAATTTTGCAAGCG GTCAAGAATTTTCTTAAAGACAAAAGCACCCTGAAATCCAAGCCAGAATGGEST: gi|71869640|gb|DT018695.1|DT018695
genomic: TGATGCATCTGATAGAATTTTGCAAGCGgtaaatgtcg ... cgttccaaagGTCAAGAATTTTCTTAAAGACAAAAGCACCCTGAAATCCAAGCCAGAATGG
EST: CTGGTTTAAGGGCATTGGGAATTGATGCATCTGATAGAATTTTGCAAGCG GTCAAGAATTTTCTTAAAGACAAAAGCACCCTGAAATCCAAGCCAGAATGG
genomic: CTGGTTTAAGGGCATTGGGAATTGATGCATCTGATAGAATTTTGCAAGCGgtaaatgtcg ... cgttccaaagGTCAAGAATTTTCTTAAAGACAAAAGCACCCTGAAATCCAAGCCAGAATGG
tgttttaacactttgtttgcctcatacttataaatttaagctttccgttccaaagGTCAAGAATTTTCTTAAAGACAAAAGCACCCTGAAATCCAAGCCAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGG
ttttaac putative branch site (score: 2)
ctttccgttcc putative PPT
atacttataaatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgtcgctccctattgtatcttttcttcgtgttttaacactttgtttgcctcatacttataaatttaagctttccgttccaaagGTCAAGAATTTTCTTAAAGACAAAAGCACCCTGAAATCCAAGCCAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG