1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agttgcaatgagcaagcattctaggttttcccctttctattgatttttatgaacatcttattgtggattttaaagttgctatgtgcgaattattttgcagGAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGGACAAGGAATATGGGATTCACACATCAAGAACTTATTGAGATTCTCAGCT
species | Vitis vinifera |
transcript | Vv05s0094g01380.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGTGCTGGTATCAGAGTTTAAACCTGTTCCTGATGTGGATTATCTGCAG GAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGGEST: gi|71870474|gb|DT019529.1|DT019529
genomic: CGGTGCTGGTATCAGAGTTTAAACCTGTTCCTGATGTGGATTATCTGCAGgtatgttaac ... tattttgcagGAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGG
EST: CGGTGCTGGTATCAGAGTTTAAACCTGTTCCTGATGTGGATTATCTGCAG GAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGGEST: gi|30320624|gb|CD003886.1|CD003886
genomic: CGGTGCTGGTATCAGAGTTTAAACCTGTTCCTGATGTGGATTATCTGCAGgtatgttaac ... tattttgcagGAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGG
EST: CGGTGCTGGTATCAGAGTTTAAACCTGTTCCTGATGTGGATTATCTGCAG GAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGGEST: gi|30321162|gb|CD004424.1|CD004424
genomic: CGGTGCTGGTATCAGAGTTTAAACCTGTTCCTGATGTGGATTATCTGCAGgtatgttaac ... tattttgcagGAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGG
EST: TGATGTGGATTATCTGCAG GAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGGEST: gi|110374681|gb|EC939602.1|EC939602
genomic: TGATGTGGATTATCTGCAGgtatgttaac ... tattttgcagGAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGG
EST: CGGTGCTGGTATCAGAGTTTAAACCTGTTCCTGATGTGGATTATCTGCAG GAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGG
genomic: CGGTGCTGGTATCAGAGTTTAAACCTGTTCCTGATGTGGATTATCTGCAGgtatgttaac ... tattttgcagGAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGG
tttatgaacatcttattgtggattttaaagttgctatgtgcgaattattttgcagGAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGGACAAGGAATATGGGATTCACACATCAAGAACTTATTGAGATTCTCAGCT
ttatttt CT-rich tract
attttaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgcaatgagcaagcattctaggttttcccctttctattgatttttatgaacatcttattgtggattttaaagttgctatgtgcgaattattttgcagGAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGGACAAGGAATATGGGATTCACACATCAAGAACTTATTGAGATTCTCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - gcaatga
- - - - - -gcaagca
- - - - - - - - - - - - - - - ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgc