Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacccactcaatgccaccacacaagattgagattttcaaatccatggagaattgggttgaggagaagttttaattcacctgaagCCAGTTGAGAAAT

Basic information

species Vitis vinifera
transcript Vv05s0094g00650.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0094g00650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G32850.1 (Glycine max), 3'ss of exon 1
---gtaacccactcaatgccaccacacaagattga-gattttcaaatccatggagaattgggttg----------aggagaagttttaattcacctgaagCCAGTTGAGAAAT---------------------------------------------------------------------------------------
    |||  |  |  |  | |     |||  ||   |   |   |     || | | |||  ||           |  ||   ||| ||||    || ||  || |   ||||                                                                                       
ccaataataccattcactctattgatcaaatttaccggcatatgatcatttgaaaagttgttttattatttctctaaaagtcatttgaatttctttgtagAGAGGTTGAAAATATTAAGAAGCCATTCACTCCTCCCAGAGAAGTGCATGTTCAAGTAACCCACTCTATGCCTCCCCAGAAGATTGAGATTTTCAAATCT

upper sequence: Vv05s0094g00650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G15600.1 (Glycine max), 3'ss of exon 1
----------gtaacccactcaatg---ccaccacacaagattgagatt-ttcaaatccatggagaattgggttgaggagaagttttaattcacctgaagCCAGTTGAGAAAT---------------------------------------------------------------------------------------
          |     ||||| ||    | |    || ||  |  |||  || |||  |||       |   |  |  ||  |||| ||||    || ||  || |   ||||                                                                                       
taccaatgatgcctttcactctattgatcaaatttaccagcatatgatcatttaaaaacattttattatttctctaaaagtcgtttgaatttctttgtagAGAGGTTGAAAATATTAAGAAGCCATTCACTCCTCCCAGAGAAGTGCATGTTCAAGTAACCCACTCTATGCCTCCTCAGAAGATTGAGATTTTCAAATCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattttcaaatccatggagaattgggttgaggagaagttttaattcacctgaagCCAGTTGAGAAAT
                                      ttttaat  putative branch site (score: 3)
                                            ttcacct  CT-rich tract
                                   aagttttaatt  TA-rich tract