1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gactagttcatgcttattcaagaatgtagccatttgtttccactacacaccgtcctctgttccttcatgttgtgttcctaaatacattggtatgatgcagAGGCTGTTCCAAAAAAAATTCTGGAGTTGATGAATGTTCCTGGGCTTACTAGAGAAAATGTTGCCAGTCACCTTCAG
species | Vitis vinifera |
transcript | Vv05s0077g01480.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
cacaccgtcctctgttccttcatgttgtgttcctaaatacattggtatgatgcagAGGCTGTTCCAAAAAAAATTCTGGAGTTGATGAATGTTCCTGGGCTTACTAGAGAAAATGTTGCCAGTCACCTTCAG
tcctaaa putative branch site (score: 2)
taaatacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactagttcatgcttattcaagaatgtagccatttgtttccactacacaccgtcctctgttccttcatgttgtgttcctaaatacattggtatgatgcagAGGCTGTTCCAAAAAAAATTCTGGAGTTGATGAATGTTCCTGGGCTTACTAGAGAAAATGTTGCCAGTCACCTTCAG
- - - -tcatgct
- - - - - - - - -tcaagaa
- - - - - - - - - - - - - - -ccatttg
- - - - - - - - - - - - - - - - - - - -ccactac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataca