Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttattgaagtgaaattgaaacacagcaaaagctggaatgaatatcaactttcctaaccgactgtctgctgatgattcttttctttgtactctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCCAGTTACAGTGGTGAAGAATGCGGAAGAAAGTGGAAAATGAAGGTTAGTG

Basic information

species Vitis vinifera
transcript Vv05s0077g01070.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868324|gb|DT017379.1|DT017379
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110390636|gb|EC955556.1|EC955556
EST:     CCTTTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110702564|gb|EE081424.1|EE081424
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110707481|gb|EE083930.1|EE083930
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110371152|gb|EC934947.1|EC934947
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110394618|gb|EC959809.1|EC959809
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110379108|gb|EC944284.1|EC944284
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110364312|gb|EC923847.1|EC923847
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|351043949|gb|FQ431380.1|FQ431380
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110726202|gb|EE101775.1|EE101775
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|349814131|gb|FQ414750.1|FQ414750
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|71868813|gb|DT017868.1|DT017868
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|30251624|gb|CB969357.1|CB969357
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|87584440|gb|DY473620.1|DY473620
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|26267663|gb|CA818726.1|CA818726
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|351043996|gb|FQ431427.1|FQ431427
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110369608|gb|EC933772.1|EC933772
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|71873183|gb|DT022238.1|DT022238
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110379209|gb|EC944389.1|EC944389
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|351022985|gb|FQ428894.1|FQ428894
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110688269|gb|EE066629.1|EE066629
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110385760|gb|EC950312.1|EC950312
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|349807840|gb|FQ402231.1|FQ402231
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|30131253|gb|CB916592.1|CB916592
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110361670|gb|EC925162.1|EC925162
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|349827143|gb|FQ421416.1|FQ421416
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGACAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110393932|gb|EC959521.1|EC959521
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|351032190|gb|FQ460447.1|FQ460447
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|33406144|gb|CF211771.1|CF211771
EST:     CCTTTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|351016279|gb|FQ446139.1|FQ446139
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|26265610|gb|CA816673.1|CA816673
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGGGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|26261907|gb|CA812970.1|CA812970
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTNAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110705834|gb|EE083136.1|EE083136
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|349824196|gb|FQ417583.1|FQ417583
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110427794|gb|EC994245.1|EC994245
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110689056|gb|EE064944.1|EE064944
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110732453|gb|EE107755.1|EE107755
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110395453|gb|EC961118.1|EC961118
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|33406236|gb|CF211863.1|CF211863
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110389951|gb|EC954829.1|EC954829
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|352785801|gb|FQ475804.1|FQ475804
EST:     CCTTTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110703478|gb|EE080357.1|EE080357
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|32459139|gb|CD800313.1|CD800313
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|22011106|gb|BQ796140.1|BQ796140
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110686402|gb|EE064002.1|EE064002
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110382944|gb|EC947277.1|EC947277
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|351016984|gb|FQ424411.1|FQ424411
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110425553|gb|EC991941.1|EC991941
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110364750|gb|EC928233.1|EC928233
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|30251571|gb|CB969304.1|CB969304
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110727022|gb|EE103339.1|EE103339
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|110367443|gb|EC931376.1|EC931376
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|351019348|gb|FQ429508.1|FQ429508
EST:     CCCCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
EST: gi|34320492|gb|CF373246.1|CF373246
EST:     CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAG                         GGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC
genomic: CCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGgtaggatttg ... ctctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaactttcctaaccgactgtctgctgatgattcttttctttgtactctttgcagGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCCAGTTACAGTGGTGAAGAATGCGGAAGAAAGTGGAAAATGAAGGTTAGTG
                               ttcttttctttgtact  CT-rich tract
                              attctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - aagtgaaa
- - - - - - - - - gaaacac
- - - - - - - - - - - - - -caaaagc
- - - - - - - - - - - - - - - - - -ggaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - -cctaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgctg