1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttcttcattgatccctggatctgacaatatatgctatctcctctgttaccccatgaattttatgctgatgttttgaactgttcacacctcatgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAA
species | Vitis vinifera |
transcript | Vv05s0062g00220.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAG TCAAGGAGCTTGATACTGCAGAGCCAAGACEST: gi|349822773|gb|FQ398160.1|FQ398160
genomic: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAGgttctcgtat ... catgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGAC
EST: AAAAGGCTGGTTTTTCTGATTATGGCTTCTCCGGGGTTCCAGTTTTCCAG TCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNEST: gi|349816841|gb|FQ399709.1|FQ399709
genomic: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAGgttctcgtat ... catgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTT
EST: AAAAGGCTGGTTTTTCTGATTATGGCTTCTCCGGGGTTCCAGTTTTCCAG TCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNEST: gi|110412506|gb|EC978256.1|EC978256
genomic: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAGgttctcgtat ... catgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTT
EST: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAG TCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNEST: gi|349819759|gb|FQ402696.1|FQ402696
genomic: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAGgttctcgtat ... catgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTT
EST: AAAAGGCTGGTTTTTCTGATTATGGCTTCTCCGGGGTTCCAGTTTTCCAG TCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAAATATCGGCCAGNNNNEST: gi|110708560|gb|EE086241.1|EE086241
genomic: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAGgttctcgtat ... catgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAA-TATCGGCCAGTTTT
EST: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAN TCAAGGAACTTGATACTGCAGAGCCAA-A-AAGAAGAATATCGGGCCAGTTEST: gi|110417406|gb|EC983458.1|EC983458
genomic: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAGgttctcgtat ... catgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAA-A-TATCGG-CCAGTT
EST: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAG TCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNEST: gi|77581122|gb|DV219487.1|DV219487
genomic: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAGgttctcgtat ... catgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTT
EST: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAG TCAAGGAGCTTGATACTGCEST: gi|349830095|gb|FQ420355.1|FQ420355
genomic: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAGgttctcgtat ... catgtttcagTCAAGGAGCTTGATACTGC
EST: AAAAGGCTGGTTTTTCTGATTATGGCTTCTCCGGGGTTCCAGTTTTCCAG TCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNEST: gi|110687203|gb|EE064406.1|EE064406
genomic: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAGgttctcgtat ... catgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTT
EST: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAG TCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNEST: gi|352764381|gb|FQ471348.1|FQ471348
genomic: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAGgttctcgtat ... catgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTT
EST: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAG TCAAGGAACTTGATACTGCACAGCCAAGACAAGAAATATCGGCCEST: gi|161718396|gb|FC064783.1|FC064783
genomic: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAGgttctcgtat ... catgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCC
EST: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAG TCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTT
genomic: AAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAGgttctcgtat ... catgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTT
gttaccccatgaattttatgctgatgttttgaactgttcacacctcatgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAA
tgctgat putative branch site (score: 3)
atgaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttcattgatccctggatctgacaatatatgctatctcctctgttaccccatgaattttatgctgatgttttgaactgttcacacctcatgtttcagTCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - -tgatccc
- - - - - - - - - - -ctgacaa
- - - - - - - - - - - - - - - - tgctatc
- - - - - - - - - - - - - - - - - - - - - - - - accccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacacc