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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgagaaggctcatataccttttttcttgaagcagagtaaccgctcaatctcttgaattatgtggttaaaaaatgtctagttgcttctgttggttattcagGAGGGTGTAAATGGCGCTCTAGTTGCTTCTGTAACAGAAATATCAGAAATTCAGCAAAAAGTTCTAAAGGAAGAAGGATTCACAGAAGTTGAGGTATCTC

Basic information

species Vitis vinifera
transcript Vv05s0051g00860.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351049107|gb|FQ431651.1|FQ431651
EST:     TGAAAAGAAGCATAGACCCAAAAGAAAATGATGCATCTCCTCCACCAAAG                         GAGGGTGTAAATGGCGCTCTAGTTGCTTCTGTAACAGAAATATCAGAAATT
genomic: TGAAAAGAAACATAGACCCAAAAGAAAATGATGCATCTCC---ACCAAAGgtacattcct ... ggttattcagGAGGGTGTAAATGGCGCTCTAGTTGCTTCTGTAACAGAAATATCAGAAATT
EST: gi|351012243|gb|FQ426965.1|FQ426965
EST:     TGAAAAGAAGCATAGACCCAAAAGAAAATGATGCATCTCCTCCACCAAAG                         GAGGGTGTAAATGGCGCTCTAGTTGCTTCTGTAACAGAAATATCAGAAA
genomic: TGAAAAGAAACATAGACCCAAAAGAAAATGATGCATCTCC---ACCAAAGgtacattcct ... ggttattcagGAGGGTGTAAATGGCGCTCTAGTTGCTTCTGTAACAGAAATATCAGAAA
EST: gi|349814900|gb|FQ410123.1|FQ410123
EST:     GAAAAGAAGCATAGACCCCAAAAGAAA-TGATGCATCTCCTCCACCAAAG                         GAGGGTGTAAAT
genomic: GAAAAGAAACATAGACCC-AAAAGAAAATGATGCATCTCC---ACCAAAGgtacattcct ... ggttattcagGAGGGTGTAAAT
EST: gi|37188606|gb|CF607955.1|CF607955
EST:     TGAAAAGAAGCATAGACCCAAAAGAAAATGATGCATCTCCTCCACCAAAG                         GAGGGTGTAAATGGCGCTCTAGTTGCTTCTGTAACAGAAATATCAGAAATT
genomic: TGAAAAGAAACATAGACCCAAAAGAAAATGATGCATCTCC---ACCAAAGgtacattcct ... ggttattcagGAGGGTGTAAATGGCGCTCTAGTTGCTTCTGTAACAGAAATATCAGAAATT
EST: gi|351043539|gb|FQ431013.1|FQ431013
EST:     GAAAAGAAGCATAGACCCAAAAGAAAATGATGCATCTCCCTCCACAAAAG                         GAGGGTGTAAATGGCGCTCTAGTTGCTTCTGTAACAGAAATATCAGAAAT
genomic: GAAAAGAAACATAGACCCAAAAGAAAATGATGCATCTCCA-CCA-AA--Ggtacattcct ... ggttattcagGAGGGTGTAAATGGCGCTCTAGTTGCTTCTGTAACAGAAATATCAGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctcttgaattatgtggttaaaaaatgtctagttgcttctgttggttattcagGAGGGTGTAAATGGCGCTCTAGTTGCTTCTGTAACAGAAATATCAGAAATTCAGCAAAAAGTTCTAAAGGAAGAAGGATTCACAGAAGTTGAGGTATCTC
                   ttaaaaaatgtcta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgagaaggctcatataccttttttcttgaagcagagtaaccgctcaatctcttgaattatgtggttaaaaaatgtctagttgcttctgttggttattcagGAGGGTGTAAATGGCGCTCTAGTTGCTTCTGTAACAGAAATATCAGAAATTCAGCAAAAAGTTCTAAAGGAAGAAGGATTCACAGAAGTTGAGGTATCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - -gctcata
- - - - - - - - - - - - - - aagcaga
- - - - - - - - - - - - - - - - - - - -ccgctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat