Sequence
atgc intronic sequence ATGC exonic sequence...tctgttatattctcgatgtactcgaggtgtttcctttgaactataattcactgtgctaaatggagtatgcttggctctaatcattacctggtccttacagGTGGGTTGTGGTAAACAAGCAGGATCATTTACATGCTTGCTTGATGAAACAGGGAAGTACAGTTCTGATGATATGGCCAGTGCAGAACTAAAACCCAATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0049g02320.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G34120.1 (Glycine max), 3'ss of exon 4
tctgttatattctcgatgtactcgaggtgtttcctttgaactataattcactgtgctaaatggagtatgcttg--gctctaatcattacctggtcctt--acagGTGGGTTGTGGTAAACAAGCAGGATCATTTACATGCTTGCTTGATGAAACAGGGAAGTACAGTTCTGATGATATGGCCAGTGCAGAACTAAAACCCAATT
||| | || | | ||| | | | | | || | | | | |||| || || |||| | | || || | || ||||||| | ||||| | ||||||||| | |||||||||||||||||| ||||||| || |||| | || || ||| | ||||| |||
--tgtcagttttatgct--acttcaaatatctgcatttgatgaatgtatttgaatttggatggtaattgatttatgctccattgcttgtttgaccttttcacagGTGCGCTGTGGAAGGCAAGCAGGAGCCTTTACATGCTTGCTTGATCAAACAGGAGTATATGATTCTCCCAAGTATGCTGATGTTGAATTCAAACCAGATT
upper sequence: Vv05s0049g02320.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G33470.1 (Glycine max), 3'ss of exon 4
--tctgttatattctcgatgtactcgaggtgtttcctttgaactataattcact--gtgctaaatggagtatgcttg--gctctaatcattacctggtcctt--acagGTGGGTTGTGGTAAACAAGCAGGATCATTTACATGCTTGCTTGATGAAACAGGGAAGTACAGTTCTGATGATATGGCCAGTGCAGAACTAAAACCCAATT
|| || ||| | ||| ||| |||||| ||| ||| ||| | | | |||| || || ||| | | || || | || ||||||| |||||| | ||||||||| | |||||||||||||||||| ||||||| || |||| || || || ||| | ||||| |||
attcctttccatttt--atgcact------gtttcccttgtacttgaatgtatttgagtttggatggtaattgatttatgctgcattgcttgtttgaccttttcacagGTGCCTTGTGGAAGGCAAGCAGGAGCCTTTACATGCTTGCTTGATCAAACAGGAGTATATGATTCTCCCGAGTATGCTGATGTTGAATTTAAACCAGATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcactgtgctaaatggagtatgcttggctctaatcattacctggtccttacagGTGGGTTGTGGTAAACAAGCAGGATCATTTACATGCTTGCTTGATGAAACAGGGAAGTACAGTTCTGATGATATGGCCAGTGCAGAACTAAAACCCAATT
tccttac CT-rich tract
taatcatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctgttatattctcgatgtactcgaggtgtttcctttgaactataattcactgtgctaaatggagtatgcttggctctaatcattacctggtccttacagGTGGGTTGTGGTAAACAAGCAGGATCATTTACATGCTTGCTTGATGAAACAGGGAAGTACAGTTCTGATGATATGGCCAGTGCAGAACTAAAACCCAATT
- - - - - - - - - - - - - -tgtttcc
- - - - - - - - - - - - - - - - - - - - - - - - -actgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattacc