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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatcgctgaagcattgtattatgtcacatccttgagtttttaagttaatagtagtcattacctcttaaccaggagaatgatcataataatggattgcaatagGTCCCGATATGTGCTTCAATCTGGTCCTGCCCGGCAGAAGGAGTAATGACTTTCTCGGCCTTTTCAGTTCTTTCGTTTTGCCGCAACCACCATCTCCTGC

Basic information

species Vitis vinifera
transcript Vv05s0049g01650.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0049g01650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G34340.1 (Glycine max), 3'ss of exon 4
gtgagatcgctgaagcattgtattatgtcacatccttgagtttttaagttaatagtagtcattacctcttaaccaggagaatgatcataataatggattgcaatagGTCCCGATATGTGCTTCAATCTGGTCCTGCCCGGCAGAAGGAGTAATGACTTTCTCGGCCTTTTCAGTTCTTTCGTTTTGCCGCAACCACCATCTCCTGC
              |  ||  ||  ||||||   ||  | ||| ||  |      ||   |||   |  |||    | | ||  | |||| |    ||  | |||| | || || |||| ||| |||||||||||| |  | |||||||| |||| |||||| || || ||||||||||| || || |||||||||||||| || |
------------gtgagttcaatggtgtcac---ctgtattttctatat-----atatcaattttatgctaagt--gtgtatatttataacatccaatgcctatagATTCCAATTTGTGGTTCTATCTGGTCCTGCTCTTCTGAAGGAGTTATGAGTTTCTCTGCTTTCTCAGTTCTTTCATTCTGTCGCAACCACCATCTACTTC

upper sequence: Vv05s0049g01650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G33310.1 (Glycine max), 3'ss of exon 4
gtgagatcgctgaagcattgtattatgtcacatccttgagtttttaagttaatagtagtcattacctcttaaccaggagaatgatcataataatggattgcaatagGTCCCGATATGTGCTTCAATCTGGTCCTGCCCGGCAGAAGGAGTAATGACTTTCTCGGCCTTTTCAGTTCTTTCGTTTTGCCGCAACCACCATCTCCTGC
              |  ||  || |||||||   ||  | ||| || ||           || |  | |   |   | | ||  | ||||      ||  | |||| | || || |||| ||| |||||||||||| |  | |||||||| ||||  ||||| ||||| ||||||||||| || || | |||||||||||| || |
------------gtgagttcaatgatgtcac---ctgtattttctatgta---------tatcaattttatgcgtagtgtatatttataacttccaatgcctatagATTCCAATTTGTGGTTCTATCTGGTCCTGCTCTTCTGAAGGAGTTATGAGCTTCTCTGCCTTCTCAGTTCTTTCATTCTGTCACAACCACCATCTACTTC

upper sequence: Vv05s0049g01650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G23530.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagatcgctgaagcattgtattatgtcacatccttgagtttttaagttaatagtagtcattacctcttaaccaggagaatgatcataata-atggat-tgcaatagGTCCCGATATGTGCTTCAATCTGGTCCTGCCCGGCAGAAGGAGTAATGACTTTCTCGGCCTTTTCAGTTCTTTCGTTTTGCCGCAACCACCATCTCCTGC
                 |     | | |    |  ||||   |  ||  |  || |     ||  || |  || || || |   ||   ||| |||  | || ||||||| |||||||| | ||| || ||||| |||||  |||| || ||  | |  ||||| || |  || ||||||||||||||| ||||||||||||| || |
----------------gtgaggctgttttctttaattgatcctacaaaatgttattcaaagttttct-tggacgagaagtaacctcgatatatatgtctgtggaatagGTACCGATATGCGGTTCGATATGGTCATGCCCATCAGACGGTGTCTTAAGCTTCTCTGCATACTCTGTTCTTTCGTTTTGCTGCAACCACCATCTTCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtagtcattacctcttaaccaggagaatgatcataataatggattgcaatagGTCCCGATATGTGCTTCAATCTGGTCCTGCCCGGCAGAAGGAGTAATGACTTTCTCGGCCTTTTCAGTTCTTTCGTTTTGCCGCAACCACCATCTCCTGC
               tcttaac  putative branch site (score: 2)
                            aatgatcataataat  TA-rich tract