Sequence
atgc intronic sequence ATGC exonic sequencegtgaatcccttttatatggatttgaaagccttagcatataaatcttatgggcccttgatgtgtgtttctaatatttgtctccatgaaaaacttgtttgtatttattttgaaaatgacagatcaattgttttgttttagGTGGTGTTGGAACAATTGACTTCTTCTCCCTGGAACAACATGTTTTTCATGATGTACTATGGCTTGGTAGTTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0049g01420.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G34920.1 (Glycine max), 3'ss of exon 3
-----gtgaatcccttttatatggatttga--aagccttagcatataaatcttatgggccc---ttgatgtgtgtttctaatatttgtctccatgaaaaacttgtttgtatttattttgaaaa----tgac-agatcaattgttttgtt-ttagGTGGTGTTGGAACAATTGACTTCTTCTCCCTGGAACAACATGTTTTTCATGATGTACTATGGCTTGGTAGTTGAAG
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gtatggtaagcttctgatgttgtatgttggtcactcctctgcccctttcacttacagggacagtattttgtatattgttaggttctataatttccttgaccctgctacaattttttaactaatgctctgatgaaatgaaatatcctgttattagGTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTTTTCATGATGTACTATGGCTTGGTTATAGAAG
upper sequence: Vv05s0049g01420.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G32690.3 (Glycine max), 3'ss of exon 4
---gtgaatcccttttatatggat-ttgaaagccttagcatataaatcttatgggcccttgatgtgtgtttctaatatttgtctccatgaaaaacttgttt---gtatttattttgaa--aatg-----acagatcaattgttttgtt-ttagGTGGTGTTGGAACAATTGACTTCTTCTCCCTGGAACAACATGTTTTTCATGATGTACTATGGCTTGGTAGTTGAAG
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gtactgtaagcttttgatgttgttgtctgttggtctgtcctctggctctttca--cttatagggagagtattttgtattgtgttctgtaatttccttggctctggtacaagtttctaactaatgctctcatgaatgaaatatcctgttattagGTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATGATGTACTATGGCTTGGTTATAGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352785920|gb|FQ475923.1|FQ475923EST: TGGATATTATTTTTAGGGGAAAGAAGGACAATACAACAGTTGCCAAAAAG GTGGTGTTGGAACAATTGACTTCTTCTCCCTGGAACAACATGTTTTTCATG
genomic: TGGATATTATTTTTAGGGGAAAGAAGGACAATACAACAGTTGCCAAAAAGgtgaatccct ... tttgttttagGTGGTGTTGGAACAATTGACTTCTTCTCCCTGGAACAACATGTTTTTCATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaaaacttgtttgtatttattttgaaaatgacagatcaattgttttgttttagGTGGTGTTGGAACAATTGACTTCTTCTCCCTGGAACAACATGTTTTTCATGATGTACTATGGCTTGGTAGTTGAAG
ttttgtttt CT-rich tract
ttgtttgtatttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaatcccttttatatggatttgaaagccttagcatataaatcttatgggcccttgatgtgtgtttctaatatttgtctccatgaaaaacttgtttgtatttattttgaaaatgacagatcaattgttttgttttagGTGGTGTTGGAACAATTGACTTCTTCTCCCTGGAACAACATGTTTTTCATGATGTACTATGGCTTGGTAGTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG