1 5' 3' | 2 5' 3' | 3 5' 3' |
...aatagtcatactgtaacaaatgcacatattaagttattaaccaagaaaccatgtgaaaattcttttaccagtcatgaaacagttaatatttgcaatgcagGGTAAGTTCATCAGAAGCTGAAGGAAATGATGGTGTGTTCTGCACCCCTGATTTCATAAATACCTTAGATTTTCGCCATCCAACTGGTATTGGTCATCGG
species | Vitis vinifera |
transcript | Vv05s0049g01390.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCATGTGAATAACACAGATGCAGAATTAGGTGGCGGAGTTAGGCAAAG GGTAAGTTCATCAGAAGCTGAAGGAAATGATGGTGTGTTCTGCACCCCTGAEST: gi|110688780|gb|EE067724.1|EE067724
genomic: CTTCATGTGAATAACACAGATGCAGAATTAGGTGGCGGAGTTAGGCAAAGgtgaaacctt ... tgcaatgcagGGTAAGTTCATCAGAAGCTGAAGGAAATGATGGTGTGTTCTGCACCCCTGA
EST: CTTCATGTGAATAACACAGATGCAGAATTAGGTGGCGGAGTTAGGCAAAG GGTAAGTTCATCAGAAGCTGAAAGAAATGATGGTGTGTTCTGCACCCCTGA
genomic: CTTCATGTGAATAACACAGATGCAGAATTAGGTGGCGGAGTTAGGCAAAGgtgaaacctt ... tgcaatgcagGGTAAGTTCATCAGAAGCTGAAGGAAATGATGGTGTGTTCTGCACCCCTGA
aaaccatgtgaaaattcttttaccagtcatgaaacagttaatatttgcaatgcagGGTAAGTTCATCAGAAGCTGAAGGAAATGATGGTGTGTTCTGCACCCCTGATTTCATAAATACCTTAGATTTTCGCCATCCAACTGGTATTGGTCATCGG
agttaat putative branch site (score: 4)
aaacagttaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatagtcatactgtaacaaatgcacatattaagttattaaccaagaaaccatgtgaaaattcttttaccagtcatgaaacagttaatatttgcaatgcagGGTAAGTTCATCAGAAGCTGAAGGAAATGATGGTGTGTTCTGCACCCCTGATTTCATAAATACCTTAGATTTTCGCCATCCAACTGGTATTGGTCATCGG
- - - - - - gtaacaa
- - - - - - - - - - -gcacata
- - - - - - - - - - - - - - - - - - -taaccaa
- - - - - - - - - - - - - - - - - - - - - - -aaaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacag