1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctttgaaatttgactgctaatatgcatgtatgcacctatctggttagacaaattttattaacatctggatgctgatgtagtccttttgtttcacttgcagAGGTTGGAAGATAAATATTCTTCCAATCCAACCGAATTCAACCTCTTGTACAGTATGGTAGAAGTCGAGGTTGCAGCTAAGACTGCAAAAGGATCATCCA
species | Vitis vinifera |
transcript | Vv05s0049g01330.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGGAGCTGCTATGGCACTTGTAAAATCTGATATTGGTGGTAATATCTCG AGGTTGGAAGATAAATATTCTTCCAATCCAACCGAATTCAACCTCTTGTACEST: gi|71883183|gb|DT032238.1|DT032238
genomic: TTGGAGCTGCTATGGCACTTGTAAAATCTGATATTGGTGGTAATATCTCGgtaagatatc ... tcacttgcagAGGTTGGAAGATAAATATTCTTCCAATCCAACCGAATTCAACCTCTTGTAC
EST: TTGGAGCTGCTATGGCACTTGTAAAATCTGATATTGGTGGTAATATCTCG AGGTTGGAAGATAAATATTCTTCCAATCCAACCGAATTCAACCTCTTGTAC
genomic: TTGGAGCTGCTATGGCACTTGTAAAATCTGATATTGGTGGTAATATCTCGgtaagatatc ... tcacttgcagAGGTTGGAAGATAAATATTCTTCCAATCCAACCGAATTCAACCTCTTGTAC
agacaaattttattaacatctggatgctgatgtagtccttttgtttcacttgcagAGGTTGGAAGATAAATATTCTTCCAATCCAACCGAATTCAACCTCTTGTACAGTATGGTAGAAGTCGAGGTTGCAGCTAAGACTGCAAAAGGATCATCCA
tccttttgtttcactt CT-rich tract
aattttattaacatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgaaatttgactgctaatatgcatgtatgcacctatctggttagacaaattttattaacatctggatgctgatgtagtccttttgtttcacttgcagAGGTTGGAAGATAAATATTCTTCCAATCCAACCGAATTCAACCTCTTGTACAGTATGGTAGAAGTCGAGGTTGCAGCTAAGACTGCAAAAGGATCATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - tgactgc
- - - - - - - - - - tatgcat
- - - - - - - - - - - - - -gtatgca
- - - - - - - - - - - - - - - - - - - - - - -agacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatgct