1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tattggcaattggtgttgatagaacatttagatgatctctttaaaagttattcttctttgcctttaataattgttcaacctggctgctgctttctagtagGTTGTGCTGGACAAGGAGAAAGAGGTGGCAACAGTGGAGAGAGAGGTGGATGGTGGTCTTGAAACTTTATGTTTGGACTTACCAGCAGTAATCAC
species | Vitis vinifera |
transcript | Vv05s0049g00470.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATGGTAGCCGGGTTGCTCAACTGGCCTCAGGGGACCTTTGCTTCCAAG GTTGTGCTGGACAAGGAGAAAGAGGTGGCAACGGTGGAGAGAGAGGTGGATEST: gi|27582621|gb|CB005316.1|CB005316
genomic: AAATGGTTGCCGGGTTGCTCAACTGGCCTCAGGGGACCTTTGCTTCCAAGgttagtccca ... tttctagtagGTTGTGCTGGACAAGGAGAAAGAGGTGGCAACAGTGGAGAGAGAGGTGGAT
EST: AAATGGTAGCCGGGTTGCTCAACTGGCCTCAGGGGACCTTTGCTTCCAAG GTTGTGCTGGACAAGGAGAAAGAGGTGGCAACAGTGGAGAGAGAGGTGGATEST: gi|161712333|gb|FC061658.1|FC061658
genomic: AAATGGTTGCCGGGTTGCTCAACTGGCCTCAGGGGACCTTTGCTTCCAAGgttagtccca ... tttctagtagGTTGTGCTGGACAAGGAGAAAGAGGTGGCAACAGTGGAGAGAGAGGTGGAT
EST: AAATGGTAGCTGGGTTGCTCAACTGGCCTCAGGGGACCTTTGCTTCCAAG GTTGTGCTGGACAAGGAGAAAGAGGTGGCAACAGTGGAGAGAGAGGTGGAT
genomic: AAATGGTTGCCGGGTTGCTCAACTGGCCTCAGGGGACCTTTGCTTCCAAGgttagtccca ... tttctagtagGTTGTGCTGGACAAGGAGAAAGAGGTGGCAACAGTGGAGAGAGAGGTGGAT
agttattcttctttgcctttaataattgttcaacctggctgctgctttctagtagGTTGTGCTGGACAAGGAGAAAGAGGTGGCAACAGTGGAGAGAGAGGTGGATGGTGGTCTTGAAACTTTATGTTTGGACTTACCAGCAGTAATCAC
ctttaat putative branch site (score: 4)
ctgctttct putative PPT
tttaataattgttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattggcaattggtgttgatagaacatttagatgatctctttaaaagttattcttctttgcctttaataattgttcaacctggctgctgctttctagtagGTTGTGCTGGACAAGGAGAAAGAGGTGGCAACAGTGGAGAGAGAGGTGGATGGTGGTCTTGAAACTTTATGTTTGGACTTACCAGCAGTAATCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - -ggtgttg
- - - - - - - - - atagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgctg