Sequence
atgc intronic sequence ATGC exonic sequencegtattataaaactacttgtttgtcacggtactcttacagcaatatttacagagtactttttcttttttcagCCTTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCCGATTCAAACGGTTGTCTTGGTGGAGCATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0029g00990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G25250.1 (Glycine max), 3'ss of exon 2
---------------------------------gtattataaa-actacttgtttgtcacggt-actcttacagcaatatttacagagtactttttcttttttcagCCTTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCCGATTCAAACGGTTGTCTTGGTGGAGCATCAG
|| | || || || ||| | | | | | |||| || | | ||||||||||| ||||| || ||||| |||||||||||||||| ||||||||||||||||| | ||| || || |||| |||||||
gtaaataaattgaaagtacttcattttggatatttagtttagctgatatttcttttgagtgtttattggtttcccaattaatatatggcactttttctttcctcagCACAGGGAGTGGTGATATTGATACCTCAAAGGTGGTGAAGGCCGATTCTGATGGTCGTATTTGTGGGGCATCAG
upper sequence: Vv05s0029g00990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G30190.1 (Glycine max), 3'ss of exon 2
-----------------------------gtattataaaactacttgtttgtcacggt--actcttacagcaatatttacagagtactttttcttttttcagCCTTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCCGATTCAAACGGTTGTCTTGGTGGAGCATCAG
|||| || || ||| | | || ||| | |||| || | |||||||| |||| ||||| || ||||| |||||||||||||||| ||||||||||||||||| | ||| || || |||| |||||||
gtaaatagattgaaaggactttattttggatatttagctgatatttctttctgagtgtgtactggtttcccaattaatatatggtacttttcctttcctcagCACAGGGAGTGGTGATATTGATACCTCAAAGGTGGTGAAGGCCGATTCTGATGGTCGTATTTGTGGTGCATCAG
upper sequence: Vv05s0029g00990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G37900.1 (Glycine max), 3'ss of exon 2
---------------gtattataaaactacttgtttgtcacg--gtactcttacagcaatatttacagagtactttttctttttt---cagCCTTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCCGATTCAAACGGTTGTCTTGGTGGAGCATCAG
| | | | | || | || | | ||| | | ||||| || || ||||| ||||| |||| || |||||||||||||||||||||| ||||||||||| ||| | | |||||| || ||| || ||||
gtaggtagaagctaattgatgttggatt-tttatctgctatgtatcactgatttaccaataaataatgatagttttttttttttccaccagCACCGGGAGTGGAGATATTGATACCTCAAAGGTGGTGAAGGCTGATGCTGATGGTTGTATTTCTGGGGCTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtttgtcacggtactcttacagcaatatttacagagtactttttcttttttcagCCTTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCCGATTCAAACGGTTGTCTTGGTGGAGCATCAG
ctcttac putative branch site (score: 3)
tactttttcttttttc putative PPT
tactttttctttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattataaaactacttgtttgtcacggtactcttacagcaatatttacagagtactttttcttttttcagCCTTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCCGATTCAAACGGTTGTCTTGGTGGAGCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA