Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataaactattgtagctcttatgaaactcaaaattgctttcctgtttaatttatgaaatctgtaggattcacaagttgaggtataattgcagGTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAG

Basic information

species Vitis vinifera
transcript Vv05s0020g04210.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G28980.2 (Glycine max), 3'ss of exon 3
---gtatataaactattgtagctcttatg-aaactcaaaattgctttcctgtttaatttatgaaatctgtaggattcacaagttgaggtataattgcagGTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAG--
    |  | ||  |    |  |  |  |  ||||| |     | |  | |     | || |||||| |||     |||    ||    |  | |||||||||||||||||||| || ||||||  |||||||||||||||||| || |||||| |||| |||||||| |||||||| |||||||||  
gtaattgagaatttgccttctcattagtataaactgagtgaagttcacttaggccactt-tgaaatatgtgttgatca----ttttcattcatttgcagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGGT

upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G28980.1 (Glycine max), 3'ss of exon 3
---gtatataaactattgtagctcttatg-aaactcaaaattgctttcctgtttaatttatgaaatctgtaggattcacaagttgaggtataattgcagGTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAG
    |  | ||  |    |  |  |  |  ||||| |     | |  | |     | || |||||| |||     |||    ||    |  | |||||||||||||||||||| || ||||||  |||||||||||||||||| || |||||| |||| |||||||| |||||||| |||||||||
gtaattgagaatttgccttctcattagtataaactgagtgaagttcacttaggccactt-tgaaatatgtgttgatca----ttttcattcatttgcagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG

upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G38760.1 (Glycine max), 3'ss of exon 3
gtatataaactattgtagctcttatgaa---actcaaaattgctttcctgtttaatttatgaaatctgtaggattcacaagttgaggtataattgcagGTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAG
|||  | |    |||    ||| || ||   ||| |     | |  | |     | || ||| || |||     | |  | ||    |  | || ||||||||||||||||| || ||||||  |||||||||||||||||| || |||||| |||| |||||||| |||||||| |||||||||
gtaattgagaatttgcc-ttctcattaatacactgagtgaagttcacttaggccactt-tgatatatgtgttgatgatcattttcatt-catttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG

upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G43780.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatataaactattgtagctcttatgaaactcaaaattgctttcctgtttaatttatgaaatctgtaggattcacaagttgaggtataattgcagGTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAG
|| ||  | | ||  | |||  |      |||  ||| |    | | |||||    | || |||    | |||    |||   |||| | |  |||| ||||||||||| |||||||||   |||||||| ||||||||||| || ||| |||||||||||||||||||||| || || |||
gt-taagatcaatcattgctacttc----ctcttaatcgaaaacttctttaagggtttaagtctcattgtttcg---gttt--gtatgaat--agGTCGCTGCATATGACAAAACTCAGGGGAAAATGGCCTTCTTTGATCCTTCCAGGTCTCAAGACTTCCTCTTCATATCAGGAACCAAG

upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G14680.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatataaactattgtagctcttatgaaactcaaaattgctttcctgtttaatttatgaaatctgtaggattcacaagttgaggt----ataattgcagGTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAG
     || | |  |  |   |  || | ||||||| ||| | || |  || |   ||  |  || |  || |    | ||  |||    ||   || |||||||||| || ||||| || ||    || ||||| ||||||||||||||||||||||| |||||| | ||||| |||||||| |||
----gtatattcatagaaaccgcataatactcaaacttggtatcttccttcaaagatttaggctttttgagttctgatttctggtttcaattggtgtagGTTGCTGCGTACGATAAGACACAAGGAAAGATGGCTTTCTTTGATCCCTCAAGGGCTCAGGACTTCTTGTTCATTTCTGGCACTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcctgtttaatttatgaaatctgtaggattcacaagttgaggtataattgcagGTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAG
      gtttaat  putative branch site (score: 4)
     tgtttaatttatgaaa  TA-rich tract