1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cattaactaaggcccaacatagctgacaattacatatatggttacaagcatgcaggattattcacatgcatacatttaatctaaacttgtcctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGACCTTCAGGCTGATGAGGATCAGGCTTATAGAAAGATTCGACTGAGAGCTG
species | Vitis vinifera |
transcript | Vv05s0020g03900.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAG ATAGCTTCTGAAGGGCTCAAACATCGGGTGTATGAGATATCACTTGCTGACEST: gi|71871064|gb|DT020119.1|DT020119
genomic: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAGgtaggggttt ... cctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGAC
EST: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAG ATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGACEST: gi|77585608|gb|DV221898.1|DV221898
genomic: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAGgtaggggttt ... cctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGAC
EST: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAG ATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGACEST: gi|71890772|gb|DT039827.1|DT039827
genomic: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAGgtaggggttt ... cctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGAC
EST: AAGTTCGCAATGTCGGCAAAACTCTCGTTTCCCGCACCCAGGGTACCAAG ATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGACEST: gi|77580898|gb|DV219373.1|DV219373
genomic: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAGgtaggggttt ... cctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGAC
EST: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAG ATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGACEST: gi|71855034|gb|DT004089.1|DT004089
genomic: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAGgtaggggttt ... cctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGAC
EST: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAG ATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGACEST: gi|71868214|gb|DT017269.1|DT017269
genomic: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAGgtaggggttt ... cctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGAC
EST: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAG ATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGACEST: gi|71873149|gb|DT022204.1|DT022204
genomic: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAGgtaggggttt ... cctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGAC
EST: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAG ATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGACEST: gi|77578681|gb|DV218125.1|DV218125
genomic: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAGgtaggggttt ... cctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGAC
EST: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAG ATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGAC
genomic: AAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAGgtaggggttt ... cctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGAC
aagcatgcaggattattcacatgcatacatttaatctaaacttgtcctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGACCTTCAGGCTGATGAGGATCAGGCTTATAGAAAGATTCGACTGAGAGCTG
atctaaa putative branch site (score: 3)
cttgtcctct CT-rich tract
atacatttaatctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattaactaaggcccaacatagctgacaattacatatatggttacaagcatgcaggattattcacatgcatacatttaatctaaacttgtcctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGACCTTCAGGCTGATGAGGATCAGGCTTATAGAAAGATTCGACTGAGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
cattaac
- - - - - - cccaaca
- - - - - - - - - - - ctgacaa
- - - - - - - - - - - - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatgc