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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctttcatttgttgaggaaataataatatgcataatgatataaggttcttttttttctctttttcttttctcttatctctaaagttgattatttttgctccagGAAGACATGAGGAGCTATGACATGGAGCGTGTGACTATGAGGAGGAAGGGGACGCAATTCTTGACCCTTGAGGTCCCTGGCCTGGCTGAGAAAAGACCTT

Basic information

species Vitis vinifera
transcript Vv05s0020g03760.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03760.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os03g06440.1 (Oryza sativa), 3'ss of exon 2
gtagctttcatttgttgaggaaataataatatgcataatgatataaggttcttttttttctctttttcttttctcttatctctaaagttgattatttttgctccagGAAGACATGAGGAGCTATGACATGGAGCGTGTGACTATGAGGAGGAAGGGGACGCAATTCTTGACCCTTGAGGTCCCTGGCCTGGCTGAGAAAAGACCTT
                                | ||    | |   | |  |  | |||   ||| |  |||  ||  | |   || || | |          ||||| || |||||    ||||||||||||||| |    |||||||||| |||     |||| ||| | ||||||||||||||| ||||||||||||| ||||
--------------------------------gtatttcaacacctg-tagtagtctttaattttatggttttcctgctttgctaacttcagtgcgccactcgcagGAGGAGATGAGATCATATGACATGGAGCGTATCTTAATGAGGAGGAGGGGTCTCGAATTTTTGTCACTTGAGGTCCCTGGCTTGGCTGAGAAAAGGCCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttctctttttcttttctcttatctctaaagttgattatttttgctccagGAAGACATGAGGAGCTATGACATGGAGCGTGTGACTATGAGGAGGAAGGGGACGCAATTCTTGACCCTTGAGGTCCCTGGCCTGGCTGAGAAAAGACCTT
                                           tttttgctcc  CT-rich tract
                               taaagttgattatttt  TA-rich tract