1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcttttgagaatcaaatgtgtgtcattttcatagtgagtagatttttctacattctgcctcatcttatctagtcgtctcattgtgtttttggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGATGGTGGAACTGAAGGCTTCAAGGGTCATGCCAGGGTTATCATTCCAGG
species | Vitis vinifera |
transcript | Vv05s0020g02820.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAG AGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGEST: gi|30300928|gb|CB977722.1|CB977722
genomic: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGgtgcgtatca ... ggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGG
EST: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAG AGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGEST: gi|110711880|gb|EE088865.1|EE088865
genomic: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGgtgcgtatca ... ggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGG
EST: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAG AGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGEST: gi|110718368|gb|EE095121.1|EE095121
genomic: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGgtgcgtatca ... ggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGG
EST: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAG AGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGEST: gi|110711482|gb|EE088011.1|EE088011
genomic: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGgtgcgtatca ... ggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGG
EST: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAG AGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGEST: gi|110709674|gb|EE085351.1|EE085351
genomic: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGgtgcgtatca ... ggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGG
EST: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAG AGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGEST: gi|110712191|gb|EE089528.1|EE089528
genomic: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGgtgcgtatca ... ggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGG
EST: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAG AGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGEST: gi|110694070|gb|EE070853.1|EE070853
genomic: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGgtgcgtatca ... ggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGG
EST: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAG AGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGEST: gi|110713830|gb|EE090092.1|EE090092
genomic: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGgtgcgtatca ... ggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGG
EST: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAG AGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGEST: gi|161719612|gb|FC064545.1|FC064545
genomic: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGgtgcgtatca ... ggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGG
EST: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAG AGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGEST: gi|110711335|gb|EE087704.1|EE087704
genomic: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGgtgcgtatca ... ggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGG
EST: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAG AGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGG
genomic: TTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGgtgcgtatca ... ggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGG
ttctacattctgcctcatcttatctagtcgtctcattgtgtttttggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGATGGTGGAACTGAAGGCTTCAAGGGTCATGCCAGGGTTATCATTCCAGG
tttttggaaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttttgagaatcaaatgtgtgtcattttcatagtgagtagatttttctacattctgcctcatcttatctagtcgtctcattgtgtttttggaaatttagAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGATGGTGGAACTGAAGGCTTCAAGGGTCATGCCAGGGTTATCATTCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - -aatcaaa
- - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcatc