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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctcccaactgatcttctcattcaatgttgttgcattacacctcttcaagcctggctggcacaagcttttaatttctttgaacttccagttcctggaacagagatgagttatagagagttacatgaatatcccatggagctaaactaatagaagatgtatttatttttctttcacagAGGTGGGAATTGGAAAACTGGTGGAACCTGTCACTTGGAGACACTCCCAGAGCTCGGTTCCTCACTGGTGCCATCCGAAACTTGGTCTCAATTAAAGACA

Basic information

species Vitis vinifera
transcript Vv05s0020g02810.t01
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaatatcccatggagctaaactaatagaagatgtatttatttttctttcacagAGGTGGGAATTGGAAAACTGGTGGAACCTGTCACTTGGAGACACTCCCAGAGCTCGGTTCCTCACTGGTGCCATCCGAAACTTGGTCTCAATTAAAGACA
                    aactaat  putative branch site (score: 2)
                                   tatttatttttctttc  putative PPT
                  taaactaatagaagat  TA-rich tract