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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttcttccccatttgtgtgtgtttcttgtcaatcaattgcaatggtctatttttctttgtgacttaaagttgtgtatgggtaaataatgatgtttccctatgaatatctctagaattgacagctttaatttcatgtgattacagGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAG

Basic information

species Vitis vinifera
transcript Vv05s0020g02530.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os11g17080.1 (Oryza sativa), 3'ss of exon 3
gtatgcttcttccccatttgtgtgtgtttcttgtcaatcaattgcaatggtctatttttctttgtgacttaaagttgtgtatgggtaaataatgatgtttccctatgaatatctctagaattgacagctttaatttcatgtgattacagGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAG
                                                                       |  |    | |     || |||    ||      | ||  | |||   |     ||| |  ||||| |||  ||  |||||||||||||||||||||||||  | ||||||||| | ||||| || |||||||| |||
---------------------------------------------------------------------gtatatcacttttcccccaacaatttctttatgtcctcaaagtttcttata-----agcatctatttcttgtatttttagGATTATGTTGCAACAAGGTGGTATCGTGCACCTGAACTTTGTGGATCTTTTTTCTCTAAG

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os05g05160.1 (Oryza sativa), 3'ss of exon 3
gtatgcttcttccccatttgtgtgtgtttcttgtcaatcaattgcaatggtctatttttctttgtgacttaaagttgtgtatgggtaaataatgatgtttccctatgaatatctctagaattgacagctttaatttcatgtgattacagGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAG
                                                            |  || | || | |     ||      |   |     || | ||   || || | ||  ||   |   || | |||  |||  ||  |||||||| ||||||||||||||||| | ||||| ||  ||||||| || ||||||||||||
-----------------------------------------------------------gtacgtcatttcacgcccactacacactatgcagctcattactctt--aagatttatatcatcagctaattgatttttctgt--ttttagGATTATATTGCAACAAGGTGGTACCGAGCACCAGAGCTGTGTGGATCTTTTTTCTCCAAG

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G089484_T01 (Zea mays), 3'ss of exon 3
gtatgcttcttccccatttgtgtgtgtttcttgtcaatcaattgcaatggtctatttttctttgtgacttaaagttgtgtatgggtaaataatgatgtt-tccctatga-atatctctagaattgacagctttaatttcatgtgattacagGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAG
                                                                 |  | | | || |  |    ||    ||   ||| |  ||| |  || | |||||   || |   |||   ||  | |  ||  |||||||||||||||| ||||||||| | ||||| || |||||||| || || |||||||||
-----------------------------------------------------------------gtatgacattttttgaccactatgctattcagttgttgctaggctatctttctagtggtgtctagttt--cttactcttgttttagGATTATGTTGCAACTAGGTGGTACCGAGCACCAGAGTTGTGTGGATCTTTCTTCTCCAAG

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G017351_T01 (Zea mays), 3'ss of exon 2
gtatgcttcttccccatttgtgtgtgtttcttgtcaatcaattgcaatggtctatttttctttgtgacttaaagttgtgtatgggtaaataatgatgtttccctatgaatatctctagaattgacagctttaatttcatgtgattacagGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAG
                                                         |      |   || ||   || ||    | |||  |  |    ||   |     | | |||||| | |   |||   || || || ||  |||||||||||||||| ||||||||| | ||||| ||  ||||||| ||||||||||| |||
--------------------------------------------------------gtatgccatcttttcaaccagtatacttttcaattcttgta---cctagtctggctttgtagaatcggctaattt--cttaatctgtttttagGATTATGTTGCAACTAGGTGGTACCGAGCACCGGAGCTGTGTGGATCATTTTTCTCAAAG

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G02220.1 (Glycine max), 3'ss of exon 3
gtatgcttcttccccatttgtgtgtgtttcttgtcaatcaattgcaatggtctatttttctttgtgacttaaagttgtgtatgggtaaataatgatgtttccctatgaatatctctagaattgacagctttaatttcatgtgattacagGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAG
                                                    ||    ||||| || ||  ||  |    |    | || |  | | |   |   | |  ||     | ||||         | ||  | |  || |||||||||||||||||||||||||| || || |||||||||||||| || ||||||||||||
---------------------------------------------------gtaagaatcttt-tgcctccaaaatactcacct-tcaacatagctctcctctcgtcatcat-----gcattgtttatgcccactt-gtttccttgcagGATTATGTTGCAACAAGGTGGTATAGAGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAG

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G38510.1 (Glycine max), 3'ss of exon 2
gtatgcttcttccccatttgtgtgtgtttcttgtcaatcaattgcaatggtctatttttctttgtgacttaaagttgtgtatgggtaaataatgatgtttccctatgaatatctctagaattgacagctttaatttcatgtgattacagGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAG
                                           | ||   ||| |||  || ||  |     |  |         | || |  | | |   | | | |  ||     | ||||         | ||  | |  || |||||||| ||||||||||||||||| || || |||||||||||||| || ||||||||||||
-------------------------------------------gtaagaatct-tttgcctctgaaatactcacct---------tcaacatagctttcctcttgtcatcat-----gcattgtttatgcccactt-gtttccttgcagGATTACGTTGCAACAAGGTGGTATAGAGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAG

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G28120.1 (Glycine max), 3'ss of exon 3
gtatgcttcttccccatttgtgtgtgtttcttgtcaatcaattgcaatggtctatttttctttgtgacttaaagttgtgtatgggtaaataatgatgtttccctatgaatatctctagaattgacagctttaatttcatgtgattacagGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAG
                                           | |    |||  |||||  ||  |||     |    |     | |  |  | | | |  ||  |   |||||      | ||  ||| |  ||  | || || ||||||||||||||||| |||||||| ||||| ||||| |||||||| || ||||| ||||||
-------------------------------------------gtatgaatct--ttttccctgaaact----atctccttcaattgagcatagctctctttctcagttcatctcg-----tcacctcttaatgtttgtttgcttgcagGATTATGTTGCAACCAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAG

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G10940.4 (Glycine max), 3'ss of exon 3
gtatgcttcttccccatttgtgtgtgtttcttgtcaatcaattgcaatggtctatttttctttgtgacttaaagttgtgtatgggtaaataatgatgtttccctatgaatatctctagaattgacagctttaatttcatgtgattacagGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAG
                                           | |    |||  |||||  ||  |||   |  |     ||  || |||    | |||| |  |  ||  |     ||||  | | ||        | || || |||||||||||||||||| ||||||| ||||| ||||| |||||||| || ||||| ||||||
-------------------------------------------gtatgaatct--ttttccctgaaactatcaccttcaattg--tacatagctctctttctcagttcatcacctcttaatt--ccgttt-------gtttgcttgcagGATTATGTTGCAACACGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttccctatgaatatctctagaattgacagctttaatttcatgtgattacagGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAG
                                  tttaatttcat  TA-rich tract