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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtcttctctaaatgccataattgcttctgtctttactttttcagtttttttgaagatgtgtaattgacctgatatactggtttgatgtttgcttgtagTGCCCTACGGGTCGGATTTCGTTCAAGCTCTATGATTGGAATCCTGCTGAATTTCCCAGACGACTTAGGCACCAA

Basic information

species Vitis vinifera
transcript Vv05s0020g02160.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G10620.1 (Glycine max), 3'ss of exon 3
gtgggtcttctctaaatgccataattgcttctgtctttactttttcagtttttttgaagatgtgtaattgacctgatatactggtttgatgtttgcttgtagTGCCCTACGGGTCGGATTTCGTTCAAGCTCTATGATTGGAATCCTGCTGAATTTCCCAGACGACTTAGGCACCAA
                        ||||   | |  ||  || || | | | || | | ||  ||  ||       | | ||| ||  | |||   ||||||||||  || ||||||||||| || ||||| ||||||||||||||||| |||||||| ||| | ||  | ||||||
-------------------gtgggttgccctttttgtttgttattaaatgtattaggaaat-cgtggttagt---gtttgctgattgaaagttcatttgtagTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGACACCAA

upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G28460.1 (Glycine max), 3'ss of exon 3
gtgggtcttctctaaatgccataattgcttctgtctttactttttcagtttttttgaagatgtgtaat--tgacctg-atatactggtttgatgtttgcttgtagTGCCCTACGGGTCGGATTTCGTTCAAGCTCTATGATTGGAATCCTGCTGAATTTCCCAGACGACTTAGGCACCAA
                ||   |      ||   ||   | || |    |||| | | |  |  | |||  ||    |  | | ||| ||  | |||   ||||||||||  || ||||||||||| || ||||| ||||||||||||||||| |||||||| ||| | ||  | || |||
---------------gtgggttgccctttttgttccaaatttatattattttgtaggaactacgaaatcatggttagcgtttgctgattgaaagttcatttgtagTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttttgaagatgtgtaattgacctgatatactggtttgatgtttgcttgtagTGCCCTACGGGTCGGATTTCGTTCAAGCTCTATGATTGGAATCCTGCTGAATTTCCCAGACGACTTAGGCACCAA
                                            tttgctt  CT-rich tract
               tgtaatt  TA-rich tract