1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatgaattatgaatggtatgattattattatcattgacagtagcaaaccattgtcatcattcacagtttcatcatcttgctattttatgattgtatacagAATAATACAGTGAGTGTGACTTCTATACTAGGAGGAGCTTCTGATAATACAGGATCTGGCATTGCTCGCCGGTTAG
species | Vitis vinifera |
transcript | Vv05s0020g00040.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAACTCTGCCAAGTTAGGACACATGTATGCAGCAGCGTCCACAAGACCT AATAATACAGTGAGTGTGACTTCTATACTAGGAGGAGCTTCTGATAATACA
genomic: CCAACTCTGCCAAGTTAGGACACATGTATGCAGCAGCGTCCACAAGACCTgtaagttttg ... ttgtatacagAATAATACAGTGAGTGTGACTTCTATACTAGGAGGAGCTTCTGATAATACA
aaccattgtcatcattcacagtttcatcatcttgctattttatgattgtatacagAATAATACAGTGAGTGTGACTTCTATACTAGGAGGAGCTTCTGATAATACAGGATCTGGCATTGCTCGCCGGTTAG
tattttatgattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgaattatgaatggtatgattattattatcattgacagtagcaaaccattgtcatcattcacagtttcatcatcttgctattttatgattgtatacagAATAATACAGTGAGTGTGACTTCTATACTAGGAGGAGCTTCTGATAATACAGGATCTGGCATTGCTCGCCGGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - -tgaatgg
- - - - - - - - - - - - - - - -cattgac
- - - - - - - - - - - - - - - - - - - - - -caaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgcta