1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctggtctagaaccagagcttcttgttccatacattaaatgaattttttttttaaaatttcatgttggcattttcaacaaccttggtactggtgtttgcagGCAATGTTGGGGCTGATCATGCTGTTTTTGAACAAGGTGCTTCAGCAGGGAATGTGGGACATCAGAAACTAGTAGAACAAAAGAAAGCGAATCCAGTGGC
species | Vitis vinifera |
transcript | Vv04s0210g00180.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCAAATACAGCAGCTGGTATTGCTGGTGGCACAGGAGTCATGCCAGGAG GCAATGTTGGGGCTGATCATGCTGTTTTTGAACAAGGTGCTTCAGCAGGGAEST: gi|110415520|gb|EC981433.1|EC981433
genomic: GGCAAATACAGCAGCTGGTATTGCTGGTGGCACAGGAGTCATGCCAGGAGgtatactcac ... gtgtttgcagGCAATGTTGGGGCTGATCATGCTGTTTTTGAACAAGGTGCTTCAGCAGGGA
EST: GGCAAATACAGCAGCTGGTATTGCTGGTGGCACAGGAGTCATGCCAGGAG GCAATGTTGGGGCTGATCATGCTGTTTTTGAGCAAGGTGCTTCAGCAGGGAEST: gi|71888801|gb|DT037856.1|DT037856
genomic: GGCAAATACAGCAGCTGGTATTGCTGGTGGCACAGGAGTCATGCCAGGAGgtatactcac ... gtgtttgcagGCAATGTTGGGGCTGATCATGCTGTTTTTGAACAAGGTGCTTCAGCAGGGA
EST: GGCAAATACAGCAGCTGGTATTGCTGGTGGCACAGGAGTCATGCCAGGAG GCAATGTTGGGGCTGATCATGCTGTTTTTGAACAAGGTGCTTCAGCAGGGA
genomic: GGCAAATACAGCAGCTGGTATTGCTGGTGGCACAGGAGTCATGCCAGGAGgtatactcac ... gtgtttgcagGCAATGTTGGGGCTGATCATGCTGTTTTTGAACAAGGTGCTTCAGCAGGGA
tttttttaaaatttcatgttggcattttcaacaaccttggtactggtgtttgcagGCAATGTTGGGGCTGATCATGCTGTTTTTGAACAAGGTGCTTCAGCAGGGAATGTGGGACATCAGAAACTAGTAGAACAAAAGAAAGCGAATCCAGTGGC
ttaaaatttcatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggtctagaaccagagcttcttgttccatacattaaatgaattttttttttaaaatttcatgttggcattttcaacaaccttggtactggtgtttgcagGCAATGTTGGGGCTGATCATGCTGTTTTTGAACAAGGTGCTTCAGCAGGGAATGTGGGACATCAGAAACTAGTAGAACAAAAGAAAGCGAATCCAGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -agaacca
- - - - - - - - -cttcttg
- - - - - - - - - - - - - ccataca
- - - - - - - - - - - - - - - - - -aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaacc