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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattttaactggcagaccaattctaccaatgcccgatgcatgctaaagtttgaatccatctgaatcaatgtttttgaatcgccccagGAAACTTCTGTTCAGACAAGAAGCCAGCTGCAGTGAACTGGATTGAAGGGCGTGGGAAGTCGGTTGTATGCGAGGCAATAATTGGGGATGAGGTTGTGAG

Basic information

species Vitis vinifera
transcript Vv04s0044g01740.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G36080.1 (Glycine max), 3'ss of exon 2
------------gtaaaattttaactggcagaccaattctaccaat-----gcccgatgc---atgctaaagtttgaatccatc-tgaatcaatgtttttgaatcgccc------cagGAAACTTCTGTTCAGACAAGAAGCCAGCTGCAGTGAACTGGATTGAAGGGCGTGGGAAGTCGGTTGTATGCGAGGCAATAATTGGGGATGAGGTTGTGAG
| ||||| | || || || | ||| || || | ||| | || |||| || ||||| || || | |||| || |||||||| || |||||| | || ||||||||||||||||| ||| | ||||| ||||||||||||||||| ||||| || ||||| || |
gtaattaattaaattaaattaaacatgacatgacatcacccttaatcttttgctttattcactatggtcaaacttgatgtcacgatgaattaaaaattggaatatatttatataacagGGAATTTCTGTTCGGATAAGAAGGCTGCGGCAGTGAACTGGATTGAGGGGAGAGGGAAATCGGTTGTATGCGAGGCTGTAATTAAAGAGGAGGTGGTTAA

upper sequence: Vv04s0044g01740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G32850.1 (Glycine max), 3'ss of exon 6
gtaaaattt--taactggcagaccaattctaccaatgcccgatgcatg--ctaaagtttgaatccatctgaatcaatgtttttgaatcgccccagGAAACTTCTGTTCAGACAAGAAGCCAGCTGCAGTGAACTGGATTGAAGGGCGTGGGAAGTCGGTTGTATGCGAGGCAATAATTGGGGATGAGGTTGTGAG
||||| | | ||| | | ||| | | | ||| |||| | | | | | ||| | | |||||||| |||||||| |||||||| | || || ||||| ||||||||||||||||| ||||| || || || ||||| |||||| ||| || || ||||
gtaaacactaccatctgatgtctctttactagaattttctttgctatggttcaaagctgttgctgaaattggcataccctgttgcttttcgccagGAAATTTCTGTTCGGACAAGAAAGCTGCAGCCGTGAATTGGATTGAAGGGCGTGGCAAGTCTGTGGTGTGTGAGGCCATAATTAAGGAGGATGTGGTGAA

upper sequence: Vv04s0044g01740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G21620.1 (Glycine max), 3'ss of exon 3
gtaaaattttaactggcagaccaattctaccaatgcccgatgcatgctaaagtttgaatccat--ctgaa----tca-atgtt-tttgaatcgccccagGAAACTTCTGTTCAGACAAGAAGCCAGCTGCAGTGAACTGGATTGAAGGGCGTGGGAAGTCGGTTGTATGCGAGGCAATAATTGGGGATGAGGTTGTGAG
||||| | | | | || | | | | | ||| | ||| || | | ||||| ||| || |||| | |||| || |||||||| |||||||| | || || ||||| ||||||||||||||||| ||||| || || || ||||| |||||| ||| || |||||||
gtaaa-catggccctctatatgtgtttttgctacatt-gttttttgccatggttgaaagcagttgctgaaattgtcacataccctttgttctgtatcagGCAATTTCTGTTCGGACAAGAAAGCCGCAGCCGTGAATTGGATTGAAGGGCGTGGCAAGTCTGTGGTGTGTGAGGCCATAATTAAGGAGGATGTTGTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgatgcatgctaaagtttgaatccatctgaatcaatgtttttgaatcgccccagGAAACTTCTGTTCAGACAAGAAGCCAGCTGCAGTGAACTGGATTGAAGGGCGTGGGAAGTCGGTTGTATGCGAGGCAATAATTGGGGATGAGGTTGTGAG
        tgctaaa  putative branch site (score: 2)
 tcgcccc  putative PPT
 aatgttttt  TA-rich tract