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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattttaactggcagaccaattctaccaatgcccgatgcatgctaaagtttgaatccatctgaatcaatgtttttgaatcgccccagGAAACTTCTGTTCAGACAAGAAGCCAGCTGCAGTGAACTGGATTGAAGGGCGTGGGAAGTCGGTTGTATGCGAGGCAATAATTGGGGATGAGGTTGTGAG

Basic information

species Vitis vinifera
transcript Vv04s0044g01740.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G36080.1 (Glycine max), 3'ss of exon 2
------------gtaaaattttaactggcagaccaattctaccaat-----gcccgatgc---atgctaaagtttgaatccatc-tgaatcaatgtttttgaatcgccc------cagGAAACTTCTGTTCAGACAAGAAGCCAGCTGCAGTGAACTGGATTGAAGGGCGTGGGAAGTCGGTTGTATGCGAGGCAATAATTGGGGATGAGGTTGTGAG
             | |||||  |  || ||   ||   |    |||     ||   || |   ||| | ||  ||||   ||   ||||| ||   ||   |             |||| || |||||||| || |||||| | || ||||||||||||||||| ||| | ||||| |||||||||||||||||  |||||   || ||||| || | 
gtaattaattaaattaaattaaacatgacatgacatcacccttaatcttttgctttattcactatggtcaaacttgatgtcacgatgaattaaaaattggaatatatttatataacagGGAATTTCTGTTCGGATAAGAAGGCTGCGGCAGTGAACTGGATTGAGGGGAGAGGGAAATCGGTTGTATGCGAGGCTGTAATTAAAGAGGAGGTGGTTAA

upper sequence: Vv04s0044g01740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G32850.1 (Glycine max), 3'ss of exon 6
gtaaaattt--taactggcagaccaattctaccaatgcccgatgcatg--ctaaagtttgaatccatctgaatcaatgtttttgaatcgccccagGAAACTTCTGTTCAGACAAGAAGCCAGCTGCAGTGAACTGGATTGAAGGGCGTGGGAAGTCGGTTGTATGCGAGGCAATAATTGGGGATGAGGTTGTGAG
|||||   |   | |||      |  | |||  | |  |      |||    |||| |       |  |      |   | |||  |  | |||||||| |||||||| ||||||||  | || || ||||| ||||||||||||||||| ||||| || || || ||||| ||||||  ||| || || |||| 
gtaaacactaccatctgatgtctctttactagaattttctttgctatggttcaaagctgttgctgaaattggcataccctgttgcttttcgccagGAAATTTCTGTTCGGACAAGAAAGCTGCAGCCGTGAATTGGATTGAAGGGCGTGGCAAGTCTGTGGTGTGTGAGGCCATAATTAAGGAGGATGTGGTGAA

upper sequence: Vv04s0044g01740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G21620.1 (Glycine max), 3'ss of exon 3
gtaaaattttaactggcagaccaattctaccaatgcccgatgcatgctaaagtttgaatccat--ctgaa----tca-atgtt-tttgaatcgccccagGAAACTTCTGTTCAGACAAGAAGCCAGCTGCAGTGAACTGGATTGAAGGGCGTGGGAAGTCGGTTGTATGCGAGGCAATAATTGGGGATGAGGTTGTGAG
|||||   |   |    | |    || |  | |     | |   ||| |  |||  || |  |  |||||    ||| ||    ||||    |   |||| || |||||||| ||||||||  | || || ||||| ||||||||||||||||| ||||| || || || ||||| ||||||  ||| || ||||||| 
gtaaa-catggccctctatatgtgtttttgctacatt-gttttttgccatggttgaaagcagttgctgaaattgtcacataccctttgttctgtatcagGCAATTTCTGTTCGGACAAGAAAGCCGCAGCCGTGAATTGGATTGAAGGGCGTGGCAAGTCTGTGGTGTGTGAGGCCATAATTAAGGAGGATGTTGTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgatgcatgctaaagtttgaatccatctgaatcaatgtttttgaatcgccccagGAAACTTCTGTTCAGACAAGAAGCCAGCTGCAGTGAACTGGATTGAAGGGCGTGGGAAGTCGGTTGTATGCGAGGCAATAATTGGGGATGAGGTTGTGAG
        tgctaaa  putative branch site (score: 2)
                                              tcgcccc  putative PPT
                                  aatgttttt  TA-rich tract