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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttttattgctgtaatttttagtgacttgtaatgattatttcttttcacctttgagttgcagagctagtttctataatttttatatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATTACTGAACTTGTGAATGATACTCTTACCAGTGATGGGACATGTATATCTC

Basic information

species Vitis vinifera
transcript Vv04s0044g01480.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351054641|gb|FQ456838.1|FQ456838
EST:     TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAG                         GATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
genomic: TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAGgtttgttttt ... atatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
EST: gi|351038015|gb|FQ460757.1|FQ460757
EST:     TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAG                         GATTCGGGGGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
genomic: TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAGgtttgttttt ... atatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
EST: gi|351042217|gb|FQ442684.1|FQ442684
EST:     TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAG                         GATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
genomic: TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAGgtttgttttt ... atatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
EST: gi|351057082|gb|FQ450789.1|FQ450789
EST:     TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAG                         GATTCGGGGGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
genomic: TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAGgtttgttttt ... atatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
EST: gi|351056977|gb|FQ443604.1|FQ443604
EST:     TACTGCAGAGAGAACTTCCCTCTGAATCTTTCTCATTAGTGGCTGAGGAG                         GATTCGGGGGATCTTCCCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
genomic: TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAGgtttgttttt ... atatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
EST: gi|351039598|gb|FQ461465.1|FQ461465
EST:     TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAG                         GATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
genomic: TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAGgtttgttttt ... atatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
EST: gi|352794444|gb|FQ481676.1|FQ481676
EST:     TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAG                         GATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
genomic: TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAGgtttgttttt ... atatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
EST: gi|351038675|gb|FQ464541.1|FQ464541
EST:     TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAG                         GATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
genomic: TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAGgtttgttttt ... atatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
EST: gi|352793784|gb|FQ481938.1|FQ481938
EST:     TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAG                         GATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
genomic: TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAGgtttgttttt ... atatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
EST: gi|352786467|gb|FQ479076.1|FQ479076
EST:     TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAG                         GATTCGGGGGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
genomic: TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAGgtttgttttt ... atatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
EST: gi|351042941|gb|FQ451235.1|FQ451235
EST:     TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAG                         GATTCGGGGGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT
genomic: TACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAGgtttgttttt ... atatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcttttcacctttgagttgcagagctagtttctataatttttatatctctagGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATTACTGAACTTGTGAATGATACTCTTACCAGTGATGGGACATGTATATCTC
                                        tttttat  CT-rich tract
                            tagtttctataatttt  TA-rich tract