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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggaatatgaacataatgatatgtttatgctccgaagtatctttcttcacccttgatagtgttgaaatatcatatttatgctatgatacagATTACGATGGCAATTGCAAGGGAAGTTGCATCTGTGACTCGGCTTGGCATAGAG

Basic information

species Vitis vinifera
transcript Vv04s0044g00890.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g00890.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G15610.1 (Glycine max), 3'ss of exon 2
---------------gttggaatatgaacataatgatatgtttatgctccgaagtatctttcttcacccttgatagtgttgaaatatcatatttatgctatgatacagATTACGATGGCAATTGCAAGGGAAGTTGCATCTGTGACTCGGCTTGGCATAGAG
                |   |||   ||   ||||| || ||| || | ||   | | | ||  || | ||     | |  || |||  | |||||| |  ||||||||| || ||||| ||||||||||| || ||| | |||||||| |||||||| |||
ataattcctgaaaacataataattgaaatgaaatgaaatattt-tgattcgtgttgt-tctcggcatcatt-----tctgaaattattgt-tttatggttggatacagATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAG

upper sequence: Vv04s0044g00890.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G32340.1 (Glycine max), 3'ss of exon 2
--------gttggaatatgaacataatgatatgtttatgctccgaagtatctttcttcacccttgatagtgttgaaatatcatatttatgctatgatacagATTACGATGGCAATTGCAAGGGAAGTTGCATCTGTGACTCGGCTTGGCATAGAG
         ||| ||    || | |   |||     |    |     ||| ||   |    || || | ||||     ||  | ||| || |  ||||||||| || ||||| ||||||||||| || ||| | |||||||| |||||||| |||
acatggttcttgaaaacataataaataaataaaacgaaatactttgatatattatgttgttctcgacattgtttctg-attttttttttggttggatacagATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAG

upper sequence: Vv04s0044g00890.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G18680.1 (Arabidopsis thaliana), 3'ss of exon 2
gttggaatatga-acataatgatatgtttatgctccgaagtatctttcttcacccttgatagtgttgaaatatcatatt-tatgctatgatacagATTACGATGGCAATTGCAAGGGAAGTTGCATCTGTGACTCGGCTTGGCATAGAG
|||  | | ||| ||  || ||    |   || |  |   | | | |  ||    |   || |   ||| | ||||    | | |  | |   || |||| ||||| |||||||||||||||||| | |||||||| |||||||| |||
gttt-attgtgataccaaaagaaccctccttgttttgctttctttgttctctgtttccttacttcagaagtctcatccagtttcccgttaattagGTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACTCGACTTGGCATTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatctttcttcacccttgatagtgttgaaatatcatatttatgctatgatacagATTACGATGGCAATTGCAAGGGAAGTTGCATCTGTGACTCGGCTTGGCATAGAG
              ccttgat  putative branch site (score: 5)
                         ttgaaatatcatattt  TA-rich tract