Sequence
atgc intronic sequence ATGC exonic sequence...ttactttttcaggaaagctctttcctgtggttactatagacctgctcctgttttcctaacatctaacatctgactgatatcttttgtttattgcatgtagGCAACTTGTGGAATACCTGAAATAGCTTTTGCAACATTTGAGAATATGGAATATGGAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0043g00700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os10g32540.1 (Oryza sativa), 3'ss of exon 3
-----------ttactttttcaggaaagctctttcctgtggttactatagacctgctcctgttttcctaacatctaacatctgactgatatcttttgtttattgcatgtagGCAACTTGTGGAATACCTGAAATAGCTTTTGCAACATTTGAGAATATGGAATATGGAGAAG---
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aaaactaggtttggtttattttaagaacatacttattgcggttcatat-------ttacaaatatagtcacttttttcctttacataaaagtttgtattt----cattcagGCTACTTGTGGAATTCCTGAGATTGCTTTTGCAACATTCGAAAACATGGAATATGGAGGTGAAG
upper sequence: Vv04s0043g00700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G31180.1 (Glycine max), 3'ss of exon 3
-ttactttttcaggaaagctctttcctgtggttactatagacctgc----tcctgttttcctaacatctaacatctgactgatatcttttgtttattgcatgtagGCAACTTGTGGAATACCTGAAATAGCTTTTGCAACATTTGAGAATATGGAATATGGAGAAG
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tatcaaatttcaattagctttgttaaagcaa--attatgagcttgtgtgatcttcttctgtttgcatt--atgttttcttaatattatcttacaaattcat-tagGCTACCTGCGGAATACCTGAAATAGCTTTTGCAACATTTGAGAACATGGAATATGGAGAAG
upper sequence: Vv04s0043g00700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G36340.1 (Glycine max), 3'ss of exon 3
--ttactttttcaggaaagctctttcctgtggttactatagacctgctcctgttttcctaacatctaacatctgactgatatc-ttttgtttattgcatgtagGCAACTTGTGGAATACCTGAAATAGCTTTTGCAACATTTGAGAATATGGAATATGGAGAAG
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tataattgtcccatgtttgatctataaagcaaattgta-agcttttttgatcttctgtttgcattt--tgttttcttaatattatttctttcaaattccttagGCTACCTGCGGAATACCTGAAATAGCTTTTGCAACATTTGAGAACATGGAATATGGAGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcctgttttcctaacatctaacatctgactgatatcttttgtttattgcatgtagGCAACTTGTGGAATACCTGAAATAGCTTTTGCAACATTTGAGAATATGGAATATGGAGAAG
atatcttttgtttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttactttttcaggaaagctctttcctgtggttactatagacctgctcctgttttcctaacatctaacatctgactgatatcttttgtttattgcatgtagGCAACTTGTGGAATACCTGAAATAGCTTTTGCAACATTTGAGAATATGGAATATGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - aggaaag
- - - - - - - - - - -ttcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgactga