Sequence
atgc intronic sequence ATGC exonic sequence...ttattttttattttttatttttttataataattagattttttttttcaatgaaatacggaattgttggtatatgacttggagtgcattgggctatgacagCATGCGATCGCGTACACGGGAACATCTCAAGAGGTATACGGAGCAAGGGCAACAATAAACGTGTGGGACCCATCCATACAAGTGGTCAACGAATTTAGTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G31140.1 (Glycine max), 3'ss of exon 3
ttattttttatttttta-tttttttataataattag--attttttttttcaatgaaatacggaattgttggtatatgacttggagtgcattgggctatgacagCATGCGATCGCGTACACGGGAACATCTCAAGAGGTATACGGAGCAAGGGCAACAATAAACGTGTGGGACCCATCCATACAAGTGGTCAACGAATTTAGTC
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--attttaaaaagaaaggttttgtcattagaattagtaattgttgtttttaatgtaaggagactttgattttctctattaattataaatttgcggtatg-cagCATGCGATCGCATATACGGGGTCATCGCAAGAGATGTACGGGGCAAAGGCAACAATAAACGTATGGGATCCATCAATTCAAGTAATCAACGAGTTTAGTC
upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G41280.1 (Glycine max), 3'ss of exon 3
ttattttttattttttatttttttataataattagattttttttttcaatgaaatacggaattgttggtatatgacttggagtgcattgggctatg---acagCATGCGATCGCGTACACGGGAACATCTCAAGAGGTATACGGAGCAAGGGCAACAATAAACGTGTGGGACCCATCCATACAAGTGGTCAACGAATTTAGTC
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-aatgtaccaaaaagaaatatattttg-caactgtagtttttattttgattgagaggaaacttagcatta-attattagtaattattttgtgtacatatgtagCATGCGATCGCATACACTGGATCATCACAGGAGGTTTACGGTGCAAAGGCAACAATAAATGTGTGGGAACCTTCGATCCAAGTAGTCAACGAGTTCAGTC
upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G43900.1 (Glycine max), 3'ss of exon 5
ttattttttattttttatttttttataataattagattttttttttcaatgaaatacggaattg----ttggtatatgacttggagtgcat-tgggctatgacagCATGCGATCGCGTACACGGGAACATCTCAAGAGGTATACGGAGCAAGGGCAACAATAAACGTGTGGGACCCATCCATACAAGTGGTCAACGAATTTAGTC
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-aagtttttattttaaaaaattgaat--tcgtaacgtttttttatataat-aaataaaagtttacaattttttttataattctgtgtgtatatgtactatg-tagCATGCGATCGCATACACTGGATCATCACAGGAGGTGTACGGTGCAAAGGCAACAATAAATGTGTGGGAACCTTCGATCCAAGTAGTCAACGAGTTCAGTC
upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G36380.1 (Glycine max), 3'ss of exon 3
--ttattttttattttttatttttttataataattagattttttttttcaatgaaatacggaattgttggtatatgacttggagtgcattgg-gctatgacagCATGCGATCGCGTACACGGGAACATCTCAAGAGGTATACGGAGCAAGGGCAACAATAAACGTGTGGGACCCATCCATACAAGTGGTCAACGAATTTAGTC
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attaaaaaagaaaggcttttgtcgttagaattagta-attgttgtttttaatgcaaagagactttgcttttttct-attaattctaaatttgcggtatg-cagCATGCGATCGCATATACGGGATCATCGCAAGAGATGTACGGGGCAAAGGCCACAATTAACGTATGGGATCCATCAATTCAAGTAATCAACGAGTTTAGTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaatgaaatacggaattgttggtatatgacttggagtgcattgggctatgacagCATGCGATCGCGTACACGGGAACATCTCAAGAGGTATACGGAGCAAGGGCAACAATAAACGTGTGGGACCCATCCATACAAGTGGTCAACGAATTTAGTC
aattgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttattttttattttttatttttttataataattagattttttttttcaatgaaatacggaattgttggtatatgacttggagtgcattgggctatgacagCATGCGATCGCGTACACGGGAACATCTCAAGAGGTATACGGAGCAAGGGCAACAATAAACGTGTGGGACCCATCCATACAAGTGGTCAACGAATTTAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - gaaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattg