Sequence
atgc intronic sequence ATGC exonic sequencegtaagcacacggtttttctgctagtttcagtcctctatctctccctaaactccatattgagacgaatttccatttcagGGGAACTTAGGATGGGCATTGATGCAGCGGAACAACTATATCGAAGCAGAAGATGCCTACAGGCGGGCACTTTCAATGACTCCAGATAATAACAAGATGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G23380.1 (Glycine max), 3'ss of exon 3
-------------gtaagcacacgg--tttttctgctagtttcagtcctctatctctccctaaactccatattgagacgaatttccat-ttcagGGGAACTTAGGATGGGCATTGATGCAGCGGAACAACTATATCGAAGCAGAAGATGCCTACAGGCGGGCACTTTCAATGACTCCAGATAATAACAAGATGT
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gtaaggatagcacataaaaaagtgaactttttttactcactttcacccttt-----tgtatgaaactta-attgggcttgtttgaaatgtgtagGGAAACTTGGGATGGGCACTGATGCAGCAGAACAACTACATTGAAGCAGAAGAGGCCTATCGCCGCGCACTTTTGATAGCTCCAGACAACAACAAGATGT
upper sequence: Vv04s0023g03740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G05170.1 (Glycine max), 3'ss of exon 3
----------gtaagcacacggtttttctgctagtttcagtcctctatc-----tctccctaaactccatattgagacgaatttccatttcagGGGAACTTAGGATGGGCATTGATGCAGCGGAACAACTATATCGAAGCAGAAGATGCCTACAGGCGGGCACTTTCAATGACTCCAGATAATAACAAGATGT
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gtaagaatagaatagcacataataaaaaagtgaacttttatactcttttgtgtggcttatatgaaactgaaatgggattgttttgaaatgtagGGAAACTTGGGATGGGCACTGATGCAACAGAACAATTACATAGAAGCAGAAGACGCCTACCGTCGCGCGCTTTCGATAGCCCCAGATAACAACAAGATGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttcagtcctctatctctccctaaactccatattgagacgaatttccatttcagGGGAACTTAGGATGGGCATTGATGCAGCGGAACAACTATATCGAAGCAGAAGATGCCTACAGGCGGGCACTTTCAATGACTCCAGATAATAACAAGATGT
ccctaaa putative branch site (score: 3)
tttccatttc putative PPT
atattga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcacacggtttttctgctagtttcagtcctctatctctccctaaactccatattgagacgaatttccatttcagGGGAACTTAGGATGGGCATTGATGCAGCGGAACAACTATATCGAAGCAGAAGATGCCTACAGGCGGGCACTTTCAATGACTCCAGATAATAACAAGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG