Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
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 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttgcttatattgctgttatagtgttgctagattatatctgatttgtgtatgcactcaatatataagatagctaaagaatggagttctccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTC

Basic information

species Vitis vinifera
transcript Vv04s0023g02050.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os02g47600.2 (Oryza sativa), 3'ss of exon 4
----tttttgcttatattgctgttatagtgttgctagattatatctgatttgtgtatgcactcaatatataagatagctaaagaatggagttctccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTC
       | | |  |      | ||  | |  |       |||   || || | |      |  | | |  ||| |  | || | |  |  | |        ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || || ||  | ||||| ||| | || || ||||| |||||  | |
agtaggatggttagtgacagggataatgcgaggggctgcaataaacgacttattttcaacattgacaaaagaga-acttgaaaattttacctgtgttt---cagGTTGATCGTGTTCTTTACTCATCTGTTGTTTACCCACACAACTATGGTTTCATTCCACGCACACTTTGTGAGGACGGTGACCCCATGGACGTCCTCGTCC

upper sequence: Vv04s0023g02050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G046587_T03 (Zea mays), 3'ss of exon 1
tttttgcttatattgctgttatagtgttgctagattatatctgatttgtgtatgcactcaatata-taagatagctaaagaatggagttctccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTC
|   || |  ||   ||   |   |   | ||   |     || ||  |  ||    ||  |  | |  || ||      |  |||  |  |     | |||| || ||||||||||| || || |||||||| |||||||||||||| ||||| || || ||  ||||||| || | ||| ||  |||||||||| || |
tgaatgttagtaacactaacacc-tagggttaaggtgggcttgcttgctacatcttgtcttttcactttgacagtaggtaatcggatattacttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCATTCCACGCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATAC

upper sequence: Vv04s0023g02050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G37790.1 (Glycine max), 3'ss of exon 4
-----------------------------------------------------------------------------tttttgcttatattgctgt-------tatagtgttgctagatt-atatctgatttgtgtatgcactcaatatataaga--tagctaaagaatgga-gttct------ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTC
                                                                             ||| |  | |||  || ||       | ||   || | | ||| || ||| |||  |   ||       |  |  | |  || || |  || | | |||||      || ||  |||||||||||| ||||||||||||||||||| || ||||| ||||||||||| |||||  ||||||| ||||||||||| ||||||||||| || ||| |||
gtgtcgtttccattttctttcttgcactcctcttcttccattccatatgcttaatgtattagcaaaatgtgaaagactttcttttaatagggcagtattctcatttaccatttccaaatttatttctcattgctacctgtctgtggtgaagcataactaactcactaacgaatgttctgatcaacccaacttagGTTGATCGTATTCTTTACTCATCAGTTGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTC

upper sequence: Vv04s0023g02050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G07530.1 (Glycine max), 3'ss of exon 4
----------------------------------------------------------------------tttttgcttatattgctgttatagtgttgctagattatatctga-tttgtgtatgcactcaa-tata-taagatagctaaagaatggagttctc---caaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTC
                                                                         || ||| || |    |  || | |   |  |  || ||  | ||| ||| || ||| ||  |||   |  |  |||| |||||   |  ||   | ||  |||||||||||| |||||||||||||||| || || ||||| ||||||||||| |||||  ||||||| ||||||||||| ||||||||||| || ||| |||
gtgtggttgccattttcttgcattcctcttcttcatttccttatgcttgatgtatttgcaaaatatgaaagactttcttttaataggatagtattctcattt-accatttcgaagtttatgtctgtactgaagcataactaactcactaacgaatgtgctgatcaacccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTC

upper sequence: Vv04s0023g02050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G18230.1 (Arabidopsis thaliana), 3'ss of exon 4
tttttgcttatattgctgttatagtgttgctagattatatctgatttgtgtatgca-ctcaatatataagatagctaaagaatggagttctccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTC
 | |  | ||  |  |  ||   |  || | |    |||||   |    ||| |   |  |||  | || |   || |  | || |  | | |     ||||||||||| ||||| ||||||||  |||| || || || ||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||| | |
atatatcataagtcacattttatgcattccaactaaatatcct-tcaccgtaagagtcgaaatgaagaaaaactctgatcactgaaagttttcctctctagGTTGATCGCGTTCTCTACTCATCCATTGTGTACCCCCACAACTACGGTTTCATCCCTCGAACTATCTGTGAAGACAGTGATCCAATGGATGTCCTGGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110408581|gb|EC974217.1|EC974217
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|27584281|gb|CB006976.1|CB006976
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|30137621|gb|CB922959.1|CB922959
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110725005|gb|EE101327.1|EE101327
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110714201|gb|EE090834.1|EE090834
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110411150|gb|EC976854.1|EC976854
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110395524|gb|EC961190.1|EC961190
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110383428|gb|EC947801.1|EC947801
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110421372|gb|EC987668.1|EC987668
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|71883819|gb|DT032874.1|DT032874
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|32460779|gb|CD801953.1|CD801953
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|30130758|gb|CB916097.1|CB916097
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110392954|gb|EC957638.1|EC957638
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|30126419|gb|CB911758.1|CB911758
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|27582989|gb|CB005684.1|CB005684
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110716413|gb|EE091375.1|EE091375
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|30130907|gb|CB916246.1|CB916246
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|30130760|gb|CB916099.1|CB916099
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110396411|gb|EC962096.1|EC962096
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|71889039|gb|DT038094.1|DT038094
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110729884|gb|EE106328.1|EE106328
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|30137252|gb|CB922590.1|CB922590
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110377712|gb|EC942793.1|EC942793
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110395846|gb|EC961519.1|EC961519
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|27586186|gb|CB008881.1|CB008881
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110687657|gb|EE065313.1|EE065313
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110686674|gb|EE064578.1|EE064578
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|351029910|gb|FQ427750.1|FQ427750
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110421893|gb|EC988197.1|EC988197
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|27584608|gb|CB007303.1|CB007303
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|18458436|gb|BM436714.1|BM436714
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|349829323|gb|FQ419855.1|FQ419855
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110370067|gb|EC934244.1|EC934244
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110716422|gb|EE091391.1|EE091391
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|22012437|gb|BQ797471.1|BQ797471
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|27584381|gb|CB007076.1|CB007076
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|349830764|gb|FQ417062.1|FQ417062
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110393667|gb|EC959071.1|EC959071
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|71887667|gb|DT036722.1|DT036722
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|27582243|gb|CB004938.1|CB004938
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|27586396|gb|CB009091.1|CB009091
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|18458205|gb|BM436483.1|BM436483
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|71866481|gb|DT015536.1|DT015536
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110728877|gb|EE104831.1|EE104831
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110385769|gb|EC950321.1|EC950321
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110695196|gb|EE072933.1|EE072933
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|22015144|gb|BQ800178.1|BQ800178
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110393379|gb|EC958573.1|EC958573
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110385050|gb|EC949535.1|EC949535
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|30135495|gb|CB920833.1|CB920833
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110423715|gb|EC990066.1|EC990066
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110395733|gb|EC961404.1|EC961404
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110405584|gb|EC971127.1|EC971127
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|37183453|gb|CF602807.1|CF602807
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110697619|gb|EE074766.1|EE074766
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|30132904|gb|CB918243.1|CB918243
EST:     GTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: GTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110415749|gb|EC981681.1|EC981681
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110411133|gb|EC976835.1|EC976835
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110722998|gb|EE099804.1|EE099804
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|30137253|gb|CB922591.1|CB922591
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110393789|gb|EC959280.1|EC959280
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|349833327|gb|FQ416705.1|FQ416705
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|351025456|gb|FQ435148.1|FQ435148
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110418356|gb|EC984503.1|EC984503
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|351018517|gb|FQ424624.1|FQ424624
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|30127119|gb|CB912458.1|CB912458
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|30125675|gb|CB911014.1|CB911014
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|110715188|gb|EE092949.1|EE092949
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC
EST: gi|30128077|gb|CB913416.1|CB913416
EST:     AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAG                         GTTGATCGTGTTCTTTATTCATCAGTTGTTTATCCACATAACTATGGTTTC
genomic: AGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGgtgccattct ... ccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtatgcactcaatatataagatagctaaagaatggagttctccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTC
                          agctaaa  putative branch site (score: 3)
                                         ttctcc  putative PPT
            tcaatatataagata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttttgcttatattgctgttatagtgttgctagattatatctgatttgtgtatgcactcaatatataagatagctaaagaatggagttctccaaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - -tgctgtt
- - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - -gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaagaa