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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtggtcactgcttatgctaatgatctttgtgcaatcttcatcttatgattccaatgatttatgaacaatttctatcagATCCAATTTTCTGGGCACGAAGTTCACAATATACGACAGCCAACCTCCATATGATACAGCAGTTCAACCTAATAGTCGGTCAAGTCGACGGTTCCACTCT

Basic information

species Vitis vinifera
transcript Vv04s0023g01950.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01950.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S222_25V6.1 (Physcomitrella patens), 3'ss of exon 3
---------------------gtatgtggtcactgcttatgctaatgatctttgtgcaatcttcatcttatgattccaatgatttatgaacaatttctatcagATCCAATTTTCTGGGCACGAAGTTCACAATATACGACAGCCAACCTCCATATGATACAGCAGTTCAACCTAATAGTCGGTCAAGTCG-ACGGTTCCACTCT
                     | |       |   | | ||||    || |    |      | ||    || ||     ||||||    |  || ||   ||||| ||||| ||||||||||| |||||||| |||||||| || |||||  |   |   |  ||     | ||  || |  |  | || | ||   |     
aatttcagtttctttcacatagaaaaacaagagaacatttgcttgatatgtcaacgtgtgtcttattaactggttgtg-cgatttac--ccgtttactggtagATCGAATTTCCTGGGCACGAAATTCACAATCTACGACAGTCAGCCTCCCCACAGTGGTGTGGTAGCGTCCAACCGTGGCACTCGGCGTATGGGATCGAAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110718379|gb|EE095148.1|EE095148
EST:     GTTGCAGATGATTTTTCTCGAGCCAGCAATACATATGTTGGAAAACTGAG                         ATCCAATTTTCTGGGCACGAAGTTCACAATATACGACAGCCAACCTCCATA
genomic: GTTGCAGATGATTTTTCTCGAGCCAGCAATACATATGTTGGAAAACTGAGgtatgtggtc ... tttctatcagATCCAATTTTCTGGGCACGAAGTTCACAATATACGACAGCCAACCTCCATA
EST: gi|33403641|gb|CF209268.1|CF209268
EST:     GTTGCAGATGATTTTTCTCCAGTCAGCAATACATATGTTGGAAAACTGAG                         ATCCAATTTTCTGGGCACAAAGTTCACAATATACGACAGCCAACCTCCATA
genomic: GTTGCAGATGATTTTTCTCGAGCCAGCAATACATATGTTGGAAAACTGAGgtatgtggtc ... tttctatcagATCCAATTTTCTGGGCACGAAGTTCACAATATACGACAGCCAACCTCCATA
EST: gi|33403597|gb|CF209224.1|CF209224
EST:     GTTGCAGATGATTTTTCTCGAGCCAGCAATACATATGTTGGAAAACTGAG                         ATCCAATTTTCTGGGCACGAAGTTCACAATATACGACAGCCAACCTCCATA
genomic: GTTGCAGATGATTTTTCTCGAGCCAGCAATACATATGTTGGAAAACTGAGgtatgtggtc ... tttctatcagATCCAATTTTCTGGGCACGAAGTTCACAATATACGACAGCCAACCTCCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgtgcaatcttcatcttatgattccaatgatttatgaacaatttctatcagATCCAATTTTCTGGGCACGAAGTTCACAATATACGACAGCCAACCTCCATATGATACAGCAGTTCAACCTAATAGTCGGTCAAGTCGACGGTTCCACTCT
                                             tttctatc  CT-rich tract
                                 atttatgaacaattt  TA-rich tract