1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcccaaactcaaaatggtaggccataataaatattgcttactaggacgtttcattttctcccacttgcaaaaggtatgatttctgtgacccttttcgcagGTTTTGATCATAACAGCTCAGCAGCACTCCTCAGTGTTTTTGCCATTGGATGTGCAATGGGGTCCCTCCTTGGTGGATTAATAGCAGATCGAATGTCACA
species | Vitis vinifera |
transcript | Vv04s0023g01270.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCACCATGGACTGCCATGGTTTTCTTCACCATGTGGTTTGAACTAATTG GTTTTGATCATAACAGCTCAGCAGCACTCCTCAGTGTTTTTGCCATTGGATEST: gi|122689965|gb|EC935420.1|EC935420
genomic: ACTACCATGGACTGCCATGGTTTTCTTCACCATGTGGTTTGAACTAATTGgtgagcgcaa ... cttttcgcagGTTTTGATCATAACAGCTCAGCAGCACTCCTCAGTGTTTTTGCCATTGGAT
EST: ACTACCATGGACTGCCATGGTTTTCTTCACCATGTGGTTTGAACTAATTG GTTTTGATCATAACAGCTCAGCAGCACTCCTCAGTGTTTTTGCCATTGGAT
genomic: ACTACCATGGACTGCCATGGTTTTCTTCACCATGTGGTTTGAACTAATTGgtgagcgcaa ... cttttcgcagGTTTTGATCATAACAGCTCAGCAGCACTCCTCAGTGTTTTTGCCATTGGAT
acgtttcattttctcccacttgcaaaaggtatgatttctgtgacccttttcgcagGTTTTGATCATAACAGCTCAGCAGCACTCCTCAGTGTTTTTGCCATTGGATGTGCAATGGGGTCCCTCCTTGGTGGATTAATAGCAGATCGAATGTCACA
cccttttcgc CT-rich tract
tatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccaaactcaaaatggtaggccataataaatattgcttactaggacgtttcattttctcccacttgcaaaaggtatgatttctgtgacccttttcgcagGTTTTGATCATAACAGCTCAGCAGCACTCCTCAGTGTTTTTGCCATTGGATGTGCAATGGGGTCCCTCCTTGGTGGATTAATAGCAGATCGAATGTCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- ccaaact
- - - - - - - -ggtaggc
- - - - - - - - - - - - -aataaat
- - - - - - - - - - - - - - - - - tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaag