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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtgtcatgcctgaagctcttgtttttgtagcttagattttttgcaagaaagcatcgattttacttattgatgttatatacctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTTGTGAGTCCTCCTGGGAGGGAGTACATTATTTCTGCCGTGAAAGCT

Basic information

species Vitis vinifera
transcript Vv04s0023g00820.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g00820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G47920.1 (Glycine max), 3'ss of exon 2
--------gtaatgtgtcatgcctgaagctcttgtttt-tgtagcttagattttttgcaagaaagca--tcgattttacttattgatgttatatac----ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTTGTGAGTCCTCCTGGGAGGGAGTACATTATTTCTGCCGTGAAAGCT
         |  | |    ||| |  | || || || | |||   |||   | |||  |     |||  |     |||  ||  |||||   |  |    ||| || ||| ||||||| | ||  ||||| ||||||||||| ||| | || ||||||||| |||||||||| ||  |||| || ||||||||| | |||||||| 
agtaattctttgttttctttgcattgaactatttttgtatgtgtgttactgtgtttatattttggcatgttagcgttatctaaagatgtggcactcttctcttattacaGGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGTTTTGAGTCCTCCCGGCCGGGAATATATTATTTCTTCAGTGAAAGC-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71873512|gb|DT022567.1|DT022567
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|30320861|gb|CD004123.1|CD004123
EST:     AGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: AGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|349812107|gb|FQ410904.1|FQ410904
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|161719154|gb|FC066060.1|FC066060
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|77586383|gb|DV222309.1|DV222309
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|161713163|gb|FC062503.1|FC062503
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|110726341|gb|EE102040.1|EE102040
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|28969293|gb|CB348326.1|CB348326
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|110685177|gb|EE063300.1|EE063300
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|349820894|gb|FQ408602.1|FQ408602
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|161720965|gb|FC070687.1|FC070687
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|161712242|gb|FC061616.1|FC061616
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|110701231|gb|EE078581.1|EE078581
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|110400004|gb|EC966541.1|EC966541
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|161718446|gb|FC064796.1|FC064796
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|29782790|gb|CB348406.2|CB348406
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|161706964|gb|FC056826.1|FC056826
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTA
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|351024166|gb|FQ423589.1|FQ423589
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|110686382|gb|EE063958.1|EE063958
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|110718375|gb|EE095136.1|EE095136
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|71874977|gb|DT024032.1|DT024032
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|110380953|gb|EC946257.1|EC946257
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|37184300|gb|CF603654.1|CF603654
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|351012871|gb|FQ430434.1|FQ430434
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|110720818|gb|EE097075.1|EE097075
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|161721226|gb|FC070732.1|FC070732
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|18459722|gb|BM438000.1|BM438000
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|161713464|gb|FC063095.1|FC063095
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|71872979|gb|DT022034.1|DT022034
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|33409922|gb|CF215549.1|CF215549
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
EST: gi|71871764|gb|DT020819.1|DT020819
EST:     TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAA                         AAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT
genomic: TGCGGTTTTCAAGGAATGCTTTTACTGAAGCAGAGAAGGAGAAGTTTGAAgtaatgtgtc ... ctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttttgcaagaaagcatcgattttacttattgatgttatatacctttttgcagAAGCTGTTACAAGGTGATGACTTCTATAGGATAAGATTACCATCCAATGTTGTGAGTCCTCCTGGGAGGGAGTACATTATTTCTGCCGTGAAAGCT
                             tattgat  putative branch site (score: 3)
                                          taccttttt  putative PPT
                     attttacttattgatg  TA-rich tract