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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtttcaccctgattctatcaagatatagcattctttgtaaacatcagccagaatttgagaatcacatgctgtgttctttctgcatgtttcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGC

Basic information

species Vitis vinifera
transcript Vv04s0023g00600.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os07g36190.1 (Oryza sativa), 3'ss of exon 3
ttgtttcaccctgattctatcaagatatagcattctttgtaaacatcagccagaatttgagaatcacatgctgtgttctttctgcatgtttcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGC
|  |   |  || |          || |  |||   |  |    | ||     |  ||     ||| |   | || |  || |   |  | ||| | |||||| | ||||| |||||||| ||||| ||| | || ||||| ||||| ||||||||||||||||| |||||||| || ||||||||  | || ||    |
tcttcaaatgctcaactggaagttatttttcatatctcatttctagcactgccatcttattcttcaaaacatctgctgattatctgttctacttttccagCAACGATCTGCAACAAAGGTTACATTTCCTCTAGTTTGGACCAACACTTGCTGCAGCCATCCTCTGTACCGTGAGTCTGAGCTTATACAGGAAAACTACC

upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os05g34180.1 (Oryza sativa), 3'ss of exon 3
ttgtttcaccctgattctatcaagatatagcattctttgtaaacatcagccagaatttgaga-atcacatgctgtgttctttctgcatgtt-----tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGC
     ||| | |  |  | || | |  |||| |      |||| |  ||    || |||     ||| |   | | || |      ||  |     || | | |||||||||||||| ||||| |||||||| ||  | || ||||||||||| ||||| ||||| ||||| ||||| || || ||||| ||||| || ||    |
-----tcatc-tattattttctacacttagcttatcaaataaatagaagtattaacttgttctgtcatagattttcttttaatattatagtcttgatcctttccagCAAAGGTCTGCTACAAAAGTGACATTTCCACTTGTCTGGACAAACACTTGCTGTAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCC

upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G133082_T01 (Zea mays), 3'ss of exon 3
ttgtttcaccctgattctatcaagatatagcattctttgtaaacatca--gccagaatttgagaatcacatgctgtgttctttctgcatgtttcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAAT-GCGC
||  | ||     |||     ||  ||     |       |||    |   ||  | | ||   | | ||     | || |     ||| |   ||  ||||||||||||||| ||||| |||||||| ||  | || ||||||||||||||||| ||||||||||| ||||| || |||||| | ||||| || ||| | | 
ttactgcattgctatttctctaaactagcttgtctaaatcaaagggtatttcctaagtctgtttaccgcagaagatattgtaaaatcatatccttt--acagCAAAGGTCTGCAACAAAAGTGACATTTCCACTTGTCTGGACAAACACCTGCTGTAGCCATCCTCTCTACCGCGAGTCAGAGTTGATTGAGGAAAATTGTG-

upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G145029_T01 (Zea mays), 3'ss of exon 3
ttgtttcaccctgattctatcaagata--tagcattctttgtaaacatcagccagaatttgagaatcacatgctgtgttctttctgcatgtttcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAAT-GCGC
 |  | ||   | |||     ||  ||  | |  |   ||| |         |  |  |||   | || |     | || |  |  ||| ||  ||  ||||||||||||||| ||||| |||||||| ||  | || ||||||||||||||||| ||||||||||| ||||| || |||||| | ||||| || ||| | | 
ctactgcattgttatttctctaaactagcttgactaaattgaagtgtattttctaagcttgtttaccaaagaagatattgtaacatcatattcttt--acagCAAAGGTCTGCAACAAAAGTGACATTTCCACTTGTCTGGACAAACACCTGCTGTAGCCATCCTCTCTACCGCGAGTCAGAGTTGATTGAGGAAAATTGTG-

upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G108285_T01 (Zea mays), 3'ss of exon 3
-------ttgtttcaccctgattctatcaagatatagcattctttgtaaacatcagccagaatttgagaatcacatgctgtgttctttctgcatgtttcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGC
        |||||     |  ||  | ||| | ||  || | ||||| |  |||  | |   |||   |||    |    |     |    |||  | || || ||||||||||| || |||||||| || || ||||| || ||||| || |||||||||||||| ||||| |||||||| || ||||||||  | |||||    |
gtattaaatgtttgtttgtt-tttgaacaacacattccaatgtttgtgactatc--ctattcttttcaaattgtttttgataagtat----cattctactcgtgcagCAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGCTGCAGCCACCCTCTGTACCGTGAGTCTGAGCTTATCCAGGAGAACTACC

upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G47770.1 (Glycine max), 3'ss of exon 3
--ttgtttcaccctgattctatcaagatatagcattct-ttgtaaacatcagccagaatttgagaatcacatgctgtgttctttctgcatgtttcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGC-
   ||       ||   | ||||| | | ||   |  | |  |  ||    ||   ||||||    || | |    ||   || ||   | ||| |  |  ||||| | ||||| || ||||| ||||||||| | ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| | 
tggtggaaatttctctatgtatcatg-tgtattttcatgtcttggactcgtgctttaatttgg---tctctttgactgagattccttgttctttatgatgaagcAACGATCTGCAACCAAGGTAACATTCCCTCTTGTGTGGACAAACACCTGTTGCAGCCATCCACTGTACCGTGAATCTGAGCTTATTGATGAGAATGCCCT

upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G38550.1 (Glycine max), 3'ss of exon 3
ttgtttcaccctgattctatcaagatata-gcattctttgtaaacatcagccagaatttgagaatcacatgctgtgttc---tttctgcatgtttcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGC
    ||       | |     | | |  | |  |  |||  |  | |   |  |  ||| |   |    || |    |    ||  |   | ||| |  |  ||||| | ||||| |||||||| || |||||| | ||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| |
----ttggtgaaaaattctctatgttgcatgtgtattttcaagtctttgactcgtgttttaatttggtctgtttgactgagattctttgttctttatgatgaagCAACGATCTGCAACAAAGGTAACTTTCCCTCTTGTGTGGACAAACACCTGTTGTAGCCATCCTCTGTACCGTGAATCTGAGCTTATTGATGAGAATGCCC

upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G02780.1 (Arabidopsis thaliana), 3'ss of exon 3
----ttgtttcaccctgattctatcaagatatagcattctttgtaaacatcagccagaatttgagaatcacatgctgtgtt-ctttctgcatgtttcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGC
     | |        ||| || ||  |||     ||  || ||     | |     ||| ||    ||| |||   | |  ||   | | | |   ||| ||||||||||||   ||||||||| || |||||| | |||||||| ||||| || |||||||||||||||||||||||||||||||||||  | || ||||| |
gttgctatgatgatgggatgctctcgtgatcgtagatggttggtgggttttaat---aatctggc--tcatatgtcatctgactggtttcttctcgtttgaacagCAAAGGTCAAACACAAAGGTTACGTTCCCTCTAGTGTGGACTAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATCCAGGACAATGCAC

upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G16440.1 (Arabidopsis thaliana), 3'ss of exon 3
ttgtttcaccctgattctatcaagatatagcattctttgtaaacatcagc--cagaatttgagaatcacatgctgtgttctttctgcatgtttcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGC
     |  |  |      |  | | |         ||||         ||  |||| | || ||    | | |||   | ||||| | | | |  || ||||||| ||||    |||||||| || |||||  | |||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||| ||
-cacgtagctttatcataaaaatggttggttgggttttggcgttgcttgcttcagagtatgtgaccatcctactgaaat-tttcttcttctcttatggacagCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCCGAGCTTATTGAAGAGAATGTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71878369|gb|DT027424.1|DT027424
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|71856011|gb|DT005066.1|DT005066
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110361442|gb|EC924912.1|EC924912
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110405116|gb|EC970650.1|EC970650
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110724888|gb|EE101111.1|EE101111
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|71857088|gb|DT006143.1|DT006143
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|349811100|gb|FQ406088.1|FQ406088
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|349827772|gb|FQ422640.1|FQ422640
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|351018393|gb|FQ439205.1|FQ439205
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|161708900|gb|FC059646.1|FC059646
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110691547|gb|EE069777.1|EE069777
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110381312|gb|EC946638.1|EC946638
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|71858445|gb|DT007500.1|DT007500
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|161714509|gb|FC062959.1|FC062959
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|71858250|gb|DT007305.1|DT007305
EST:     GAGCTTTCAGTGTATTTCCGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|351030753|gb|FQ438591.1|FQ438591
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|351016449|gb|FQ423876.1|FQ423876
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|351014219|gb|FQ434808.1|FQ434808
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACCCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110390835|gb|EC955766.1|EC955766
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|349816150|gb|FQ403646.1|FQ403646
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|349821590|gb|FQ408149.1|FQ408149
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110383561|gb|EC947940.1|EC947940
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|27755317|gb|CB036072.1|CB036072
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110721162|gb|EE097848.1|EE097848
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110377835|gb|EC942928.1|EC942928
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110381620|gb|EC934948.1|EC934948
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110730975|gb|EE108667.1|EE108667
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|161714485|gb|FC064460.1|FC064460
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|30303206|gb|CB980000.1|CB980000
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|349833009|gb|FQ416387.1|FQ416387
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110384862|gb|EC949328.1|EC949328
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|351031443|gb|FQ446646.1|FQ446646
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110390904|gb|EC955847.1|EC955847
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110409935|gb|EC975610.1|EC975610
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|351017045|gb|FQ424472.1|FQ424472
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|352794136|gb|FQ479378.1|FQ479378
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGGCAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|71859775|gb|DT008830.1|DT008830
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110687512|gb|EE065008.1|EE065008
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|71863235|gb|DT012290.1|DT012290
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|37190401|gb|CF609750.1|CF609750
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|161711292|gb|FC060367.1|FC060367
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|30303272|gb|CB980066.1|CB980066
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110689856|gb|EE066444.1|EE066444
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|26264645|gb|CA815708.1|CA815708
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|37190678|gb|CF610027.1|CF610027
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|351049295|gb|FQ429038.1|FQ429038
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110730593|gb|EE107853.1|EE107853
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110384180|gb|EC948599.1|EC948599
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|161717400|gb|FC068871.1|FC068871
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|161713558|gb|FC064081.1|FC064081
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|349825950|gb|FQ415755.1|FQ415755
EST:     CAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CGAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACGAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|161720991|gb|FC070700.1|FC070700
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|77580614|gb|DV219211.1|DV219211
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|71864567|gb|DT013622.1|DT013622
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTT-GGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|30305248|gb|CB982042.1|CB982042
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|351024079|gb|FQ423502.1|FQ423502
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110726293|gb|EE101950.1|EE101950
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|71873106|gb|DT022161.1|DT022161
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|110409938|gb|EC975613.1|EC975613
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|30321480|gb|CD004742.1|CD004742
EST:     GAGCTTTCAGTGTATTTCTGTGTAACTCGAAATTTGAATTACTCCTTCAG                         CAGAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
EST: gi|351029622|gb|FQ427462.1|FQ427462
EST:     GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAG                         CAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC
genomic: GAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggtt ... tcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagccagaatttgagaatcacatgctgtgttctttctgcatgtttcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGC
                                         tgtttctt  CT-rich tract
      agaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgtttcaccctgattctatcaagatatagcattctttgtaaacatcagccagaatttgagaatcacatgctgtgttctttctgcatgtttcttgtacagCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - ttcaccc
- - - - - - - - ctatcaa
- - - - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - -catcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtt