Sequence
atgc intronic sequence ATGC exonic sequencegtaggttctacccataatgtttcctttgatactatattttcagtgttgttataatcctacatttctctactcatgtttagGTTTCACAAGCTTGTAACAAGATGCTATTGCCCAACAACTGATGTTGCAAAAAGGGCATTGAAAGCTGGGCTCCAGTCTTCACAGATTAAGGTTTATGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g06920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G12120.1 (Glycine max), 3'ss of exon 3
gtaggttctacccataatgtttcc----tttgatactatattttcagtgttgttataatcctacatttctctactcatgtt---tagGTTTCACAAGCTTGTAACAAGATGCTATTGCCCAACAACTGATGTTGCAAAAAGGGCATTGAAAGCTGGGCTCCAGTCTTCACAGATTAAGGTTTATGGC
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gttagtttttttttttttttttttaatttccttttcgaaaatcatacaattgtcttattttgacatcttatttcttgttttctgtagGTTTCATAAGCTTGTAACTAGATGCTATTGTCCTACAACAGATGTTGCGCAAAGGGCATTGAAAGCTGGACTGCAGCAATCTCAAATAAAGATTTTTGGT
upper sequence: Vv04s0008g06920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G33780.1 (Glycine max), 3'ss of exon 3
gtaggttctaccc----ataatgtttccttt---gatactatattttcagtgttgttataatcctacatttctctactcatgtttagGTTTCACAAGCTTGTAACAAGATGCTATTGCCCAACAACTGATGTTGCAAAAAGGGCATTGAAAGCTGGGCTCCAGTCTTCACAGATTAAGGTTTATGGC
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gttagttttgtttttttataatattttcttttcaaaaatcatatcaattgtcttattttgacatcttatttcttgttt--tctttagGTTTCATAAGCTTGTAACTAGATGCTATTGTCCTACAACAGATGTTGCGCAAAGGGCATTGAAAGCCGGACTGCAGCAATCCCAAATAAAGATTTTTGGT
upper sequence: Vv04s0008g06920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G31780.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaggtt-ctacccataatgtttcctttgatactatattttcagtgttgttataatcctacatttctctactcatgtttagGTTTCACAAGCTTGTAACAAGATGCTATTGCCCAACAACTGATGTTGCAAAAAGGGCATTGAAAGCTGGGCTCCAGTCTTCACAGATTAAGGTTTATGGC
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gtttgttgttttatcaaatcgttcatgtggttctcttttcttaatat-attgtta--caacatgtttgttttgatgtttagGTTTCATAAGCTTGTGACAAGATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATCACAAATCAAAGTTTATGGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgatactatattttcagtgttgttataatcctacatttctctactcatgtttagGTTTCACAAGCTTGTAACAAGATGCTATTGCCCAACAACTGATGTTGCAAAAAGGGCATTGAAAGCTGGGCTCCAGTCTTCACAGATTAAGGTTTATGGC
ctttgat putative branch site (score: 5)
tttctctactc putative PPT
actatatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggttctacccataatgtttcctttgatactatattttcagtgttgttataatcctacatttctctactcatgtttagGTTTCACAAGCTTGTAACAAGATGCTATTGCCCAACAACTGATGTTGCAAAAAGGGCATTGAAAGCTGGGCTCCAGTCTTCACAGATTAAGGTTTATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG