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gtgggggcaccctcttatttggatccataattcaaattactaatttccatgagaatttctttgaaccgcatcttttattgaatcaaccattcatgtgacagGATTCTGGATAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGAATCTCCTCCTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAA
species | Vitis vinifera |
transcript | Vv04s0008g06640.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTGCGAAGGATTTTAAAGAGAAGATTGAAGATGAGTATCGGGTCAACAT GATTCTGGATAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGAEST: gi|294964332|gb|GW838135.1|GW838135
genomic: ACTGCGAAGGATTTTAAAGAGAAGATTGAAGATGAGTATCGGGTCAACATgtgggggcac ... catgtgacagGATTCTGGATAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGA
EST: ACTGCGAAGGATTTTAAAGAGAAGATTGAAGATGAGTATCGGGTCAACAT GATTCTGGATAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGAEST: gi|110723814|gb|EE099106.1|EE099106
genomic: ACTGCGAAGGATTTTAAAGAGAAGATTGAAGATGAGTATCGGGTCAACATgtgggggcac ... catgtgacagGATTCTGGATAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGA
EST: ACTGCGAAGGATTTTAAAGAGAAGATTGAAGATGAGTATCGGGTCAACAT GATTCTGGATAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGAEST: gi|110700412|gb|EE078424.1|EE078424
genomic: ACTGCGAAGGATTTTAAAGAGAAGATTGAAGATGAGTATCGGGTCAACATgtgggggcac ... catgtgacagGATTCTGGATAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGA
EST: ACTGCGAAGGATTTTAAAGAGAAGATTGAAGATGAGTATCGGGTCAACAT GATTCTGGATAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGA
genomic: ACTGCGAAGGATTTTAAAGAGAAGATTGAAGATGAGTATCGGGTCAACATgtgggggcac ... catgtgacagGATTCTGGATAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGA
ccatgagaatttctttgaaccgcatcttttattgaatcaaccattcatgtgacagGATTCTGGATAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGAATCTCCTCCTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAA
atcttttattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggggcaccctcttatttggatccataattcaaattactaatttccatgagaatttctttgaaccgcatcttttattgaatcaaccattcatgtgacagGATTCTGGATAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGAATCTCCTCCTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT