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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagaatcaatcccatcattttccacattgttctatgtcatcaaagcatcatgaatcagaacatatgtttgcctattttatttatttatgttttttacagGGTTTGCGTCTGGACAGCTTTAATGCTATTTCTTCTTGCAATATTCAATGCTTGCACCATCATCTCTAGGTTTACAAGGGTTGCAGGGGAACTCTTTGGC

Basic information

species Vitis vinifera
transcript Vv04s0008g04980.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G07390.1 (Glycine max), 3'ss of exon 3
gtaagagaatcaatcccatcatttt--ccacattgttctatgtcatcaaagcatcatgaatcagaacatatgtttgcctattttatttatttatgttttttacagGGTTTGCGTCTGGACAGCTTTAATGCTATTTCTTCTTGCAATATTCAATGCTTGCACCATCATCTCTAGGTTTACAAGGGTTGCAGGGGAACTCTTTGGC
||| |  | |  |    || |||||       || |||    |    ||| |||  |  || | |   |||||||| |||  |   || || |  | | || ||||||||| || ||||| |   |  |  |  |||| |||||||| |||||||||||||| || ||| | |||||||||||  ||||||||||  | ||||||
gtacggcattttacattataattttgtttctgtttttcccatttcctaaatcattgtacattaca-tgtatgtttgtctaactctattgttcac-tgtgttgcagGGTTTGTGTTTGGACGGGAGTCTTTTTGATTCTGCTTGCAATTTTCAATGCTTGCACAATTATCACAAGGTTTACAAGAATTGCAGGGGAGTTGTTTGGC

upper sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G07480.1 (Glycine max), 3'ss of exon 4
gtaagagaatcaatcccatcat-------tttccacattgttctatgtcatcaaa-gcatcatgaatcagaacat--atgtttgcctattttatttatttatgttttttacagGGTTTGCGTCTGGACAGCTTTAATGCTATTTCTTCTTGCAATATTCAATGCTTGCACCATCATCTCTAGGTTTACAAGGGTTGCAGGGGAACTCTTTGGC
||| |  | |   |  ||| ||       ||||  | || |    | || | |||   |||||    ||  ||||  ||||||| |||  ||  |  || |   | ||| ||||||||| || ||||| |   |  |  |  |||| |||||||| |||||||||||||| || ||| | |||||||||||  ||||||||||  | ||||||
gtacggcacttttttacattataaatttgtttctgcttt-tcacgtatcctaaaataaatcatagtacattacatgtatgtttgtctaacttcatcgttcactgtgttt-cagGGTTTGTGTTTGGACGGGAATCTTTTTGATTCTGCTTGCAATTTTCAATGCTTGCACAATTATCACAAGGTTTACAAGAATTGCAGGGGAGTTATTTGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatcatgaatcagaacatatgtttgcctattttatttatttatgttttttacagGGTTTGCGTCTGGACAGCTTTAATGCTATTTCTTCTTGCAATATTCAATGCTTGCACCATCATCTCTAGGTTTACAAGGGTTGCAGGGGAACTCTTTGGC
                                           tgtttttt  CT-rich tract
                 atatgtttgcctattt  TA-rich tract