1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttatgaattagtaatggatgaaatttcacatttgtgcttgtagatggtgcaattctctctcttataaaatttgaaatttgatgtttgcattttatttcagAGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTATCTGTTGCCAATTCTCATCAGATGGAAAACTGCTTGCTAGTGGCGGCCA
species | Vitis vinifera |
transcript | Vv04s0008g04910.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGATGGCAGCAAGCCGATCGGGGATCACCGACTTCGCTGATGCATCCAG AGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTAEST: gi|110708875|gb|EE086916.1|EE086916
genomic: GGGATGGCAGCAAGCCGATCGGGGATCACCGACTTCGCTGATGCATCCAGgtaccccgtt ... tttatttcagAGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTA
EST: GGGATGGCAGCAAGCCGATCGGGGATCACCGACTTCGCTGATGCATCCAG AGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTAEST: gi|110703802|gb|EE080967.1|EE080967
genomic: GGGATGGCAGCAAGCCGATCGGGGATCACCGACTTCGCTGATGCATCCAGgtaccccgtt ... tttatttcagAGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTA
EST: GGGATGGCAGCAAGCCGATCGGGGATCACCGACTTCGCTGATGCATCCAG AGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTAEST: gi|110700254|gb|EE078082.1|EE078082
genomic: GGGATGGCAGCAAGCCGATCGGGGATCACCGACTTCGCTGATGCATCCAGgtaccccgtt ... tttatttcagAGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTA
EST: GGGATGGCAGCAAGCCGATCGGGGATCACCGACTTCGCTGATGCATCCAG AGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTAEST: gi|34546171|gb|CF514403.1|CF514403
genomic: GGGATGGCAGCAAGCCGATCGGGGATCACCGACTTCGCTGATGCATCCAGgtaccccgtt ... tttatttcagAGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTA
EST: GGGATGGCAGCAAGCCGATCGGGGATCACCGACTTCGCTGATGCATCCAG AGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTA
genomic: GGGATGGCAGCAAGCCGATCGGGGATCACCGACTTCGCTGATGCATCCAGgtaccccgtt ... tttatttcagAGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTA
ggtgcaattctctctcttataaaatttgaaatttgatgtttgcattttatttcagAGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTATCTGTTGCCAATTCTCATCAGATGGAAAACTGCTTGCTAGTGGCGGCCA
atttgat putative branch site (score: 5)
ttttatttc putative PPT
ttataaaatttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgaattagtaatggatgaaatttcacatttgtgcttgtagatggtgcaattctctctcttataaaatttgaaatttgatgtttgcattttatttcagAGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTATCTGTTGCCAATTCTCATCAGATGGAAAACTGCTTGCTAGTGGCGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - tggatga
- - - - - - - - - - - - - - - - -gtgcttg
- - - - - - - - - - - - - - - - - - - - - gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc