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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacaatttcccctttggattcacaattttctcaatgatttttgttctgttaggggtcatattttgttttggttatttgactacacattgttttggttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAAAGTCCATTTAAAGTCTATTTCTGTTTTAGTTTTTCTGAATTATGCAAAA

Basic information

species Vitis vinifera
transcript Vv04s0008g03900.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34544385|gb|CF512617.1|CF512617
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GGACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110716567|gb|EE091662.1|EE091662
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110426007|gb|EC992404.1|EC992404
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110428159|gb|EC994622.1|EC994622
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGC
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGC
EST: gi|110692276|gb|EE071338.1|EE071338
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110705824|gb|EE083118.1|EE083118
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|34321111|gb|CF373865.1|CF373865
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110393500|gb|EC958783.1|EC958783
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110693836|gb|EE070416.1|EE070416
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110392473|gb|EC957921.1|EC957921
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110707741|gb|EE084486.1|EE084486
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|71870115|gb|DT019170.1|DT019170
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|71868943|gb|DT017998.1|DT017998
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110388252|gb|EC952984.1|EC952984
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110409567|gb|EC975233.1|EC975233
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|30301004|gb|CB977798.1|CB977798
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCGGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110717458|gb|EE093330.1|EE093330
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|71869027|gb|DT018082.1|DT018082
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|71868495|gb|DT017550.1|DT017550
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110424590|gb|EC990957.1|EC990957
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110707148|gb|EE083294.1|EE083294
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110695260|gb|EE073077.1|EE073077
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|34415393|gb|CF414147.1|CF414147
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110386000|gb|EC950569.1|EC950569
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110409906|gb|EC975580.1|EC975580
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110401323|gb|EC967930.1|EC967930
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggggtcatattttgttttggttatttgactacacattgttttggttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAAAGTCCATTTAAAGTCTATTTCTGTTTTAGTTTTTCTGAATTATGCAAAA
                       atttgac  putative branch site (score: 4)
     tcatattttgtttt  TA-rich tract