1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttccctctttttttttctataattaactatcctccatgcatgcatatgcttaaactatagcttaccaacttcactaaatttgtggcatataaattcagAGAAAAGCCATATCAAAGTTTATAGAGTCATACTTGGTGTGGAAGCTGCCTCTGGTGAAGTATGGACTGAAACCAGATCACCCATTTGAGGAAGACTATG
species | Vitis vinifera |
transcript | Vv04s0008g02260.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
atatgcttaaactatagcttaccaacttcactaaatttgtggcatataaattcagAGAAAAGCCATATCAAAGTTTATAGAGTCATACTTGGTGTGGAAGCTGCCTCTGGTGAAGTATGGACTGAAACCAGATCACCCATTTGAGGAAGACTATG
cactaaa putative branch site (score: 2)
atataaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttccctctttttttttctataattaactatcctccatgcatgcatatgcttaaactatagcttaccaacttcactaaatttgtggcatataaattcagAGAAAAGCCATATCAAAGTTTATAGAGTCATACTTGGTGTGGAAGCTGCCTCTGGTGAAGTATGGACTGAAACCAGATCACCCATTTGAGGAAGACTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - ccctctt
- - - - - - - - - - - - - - - -tcctcca
- - - - - - - - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttacca