1 5' 3' | 2 5' 3' | 3 5' 3' |
...attgaagcactgcaaatctgagaagataaattacagtagaaaccctcatctttggatccgtttttacatttctttttcggggttttttgtttttttgcagGTGGGATGATCGAACCTCGGTGGTGATACCAGAAGGGGAAATCTTCTACCTAGTGGCATTGCTTCGGTTCGATCCTGCATATTCAAAGGACTCCGTCGTA
species | Vitis vinifera |
transcript | Vv04s0008g01880.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGATGGGGTTGGTGGGCCCATGCTTGTCTACCCTCTGCTTCGAAGCAA GTGGGATGATCGAACCTCGGTGGTGATACCAGAAGGGGAAATCTTCTACCTEST: gi|34545930|gb|CF514162.1|CF514162
genomic: AGAGATGGGGTTGGTGGGCCCATGCTTGTCTACCCTCTGCTTCGAAGCAAgtaagtattg ... ttttttgcagGTGGGATGATCGAACCTCGGTGGTGATACCAGAAGGGGAAATCTTCTACCT
EST: AGAGATGGGGTTGGTGGGCCCATGCTTGTCTACCCTCTGCTTCGAAGCAA GTGGGATGATCGAACCTCGGTGGTGATACCAGAAGGGGAAATCTTCTACCTEST: gi|34544938|gb|CF513170.1|CF513170
genomic: AGAGATGGGGTTGGTGGGCCCATGCTTGTCTACCCTCTGCTTCGAAGCAAgtaagtattg ... ttttttgcagGTGGGATGATCGAACCTCGGTGGTGATACCAGAAGGGGAAATCTTCTACCT
EST: AGAGATGGGGTTGGTGGGCCCATGCTTGTCTACCCTCTGCTTCGAAGCAA GTGGGATGATCGAACCTCGGTGGTGATACCAGAAGGGGAAATCTTCTACCT
genomic: AGAGATGGGGTTGGTGGGCCCATGCTTGTCTACCCTCTGCTTCGAAGCAAgtaagtattg ... ttttttgcagGTGGGATGATCGAACCTCGGTGGTGATACCAGAAGGGGAAATCTTCTACCT
tcatctttggatccgtttttacatttctttttcggggttttttgtttttttgcagGTGGGATGATCGAACCTCGGTGGTGATACCAGAAGGGGAAATCTTCTACCTAGTGGCATTGCTTCGGTTCGATCCTGCATATTCAAAGGACTCCGTCGTA
ttttttgtttttttgc CT-rich tract
tttttacatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgaagcactgcaaatctgagaagataaattacagtagaaaccctcatctttggatccgtttttacatttctttttcggggttttttgtttttttgcagGTGGGATGATCGAACCTCGGTGGTGATACCAGAAGGGGAAATCTTCTACCTAGTGGCATTGCTTCGGTTCGATCCTGCATATTCAAAGGACTCCGTCGTA
- - - -cactgca
- - - - - - - - - - - aagataa
- - - - - - - - - - - - - - - - - - - - -accctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggttt