1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttagctatgtggttgcaagcattttgttgtgggttttctgactttcatgtgcattctaatgctgatttcttgtcttgatactgaaatttcatttggcagATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTCTCTGCCACGATGCCACCTGAGGCCCTTGAGATCACAAGGAAATTCATGA
species | Vitis vinifera |
transcript | Vv04s0008g01000.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTCEST: gi|349823870|gb|FQ415281.1|FQ415281
genomic: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtccttcctt ... catttggcagATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTC
EST: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTCEST: gi|349823871|gb|FQ415282.1|FQ415282
genomic: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtccttcctt ... catttggcagATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTC
EST: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAGTTGCTGCCEST: gi|351025975|gb|FQ427987.1|FQ427987
genomic: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtccttcctt ... catttggcagATCTATGATATTTTCCAGTTGCTGCC
EST: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCGGGTTGGGGTGTTCEST: gi|349828337|gb|FQ416290.1|FQ416290
genomic: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtccttcctt ... catttggcagATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTC
EST: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTCEST: gi|110694587|gb|EE071825.1|EE071825
genomic: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtccttcctt ... catttggcagATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTC
EST: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTCEST: gi|351015540|gb|FQ447369.1|FQ447369
genomic: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtccttcctt ... catttggcagATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTC
EST: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTC
genomic: TTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtccttcctt ... catttggcagATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTC
tcatgtgcattctaatgctgatttcttgtcttgatactgaaatttcatttggcagATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTCTCTGCCACGATGCCACCTGAGGCCCTTGAGATCACAAGGAAATTCATGA
tttcattt CT-rich tract
aaatttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagctatgtggttgcaagcattttgttgtgggttttctgactttcatgtgcattctaatgctgatttcttgtcttgatactgaaatttcatttggcagATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTCTCTGCCACGATGCCACCTGAGGCCCTTGAGATCACAAGGAAATTCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -ctatgtg
- - - - - - - -gcaagca
- - - - - - - - - - - - - - -gtgggtt
- - - - - - - - - - - - - - - - - - ttctgac
- - - - - - - - - - - - - - - - - - - - - - - catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaatgc