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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgttttttgcttaatattgcctttgatcattggaattgttttggattgtattgatccgcactaatcacacttgtaaaccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCTAAAAGACGGGTATCAGGCACATCAATTTATTTTGAGTCTATGCCTTATC

Basic information

species Vitis vinifera
transcript Vv04s0008g00770.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G29410.1 (Glycine max), 3'ss of exon 4
gtaagttgttttttgcttaatattgcctttgatcattggaattgttt-tggattgtattgatccgcactaat-cacacttgtaaaccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCTAAAAGACGGGTATCAGGCACATCAATTTATTTTGAGTCTATGCCTTATC
||||  | ||||   | |    |||  |||||  |||  |||||      |||| |  | ||  |  |||||  | | | |||          |||| |||||||| ||||| || || || ||||||||||| |||||||| || |||| ||| ||||||| |||||||||||||||||| |||||||||||||
gtaaactattttc--cctgcacttgattttgactattccaattggcagccgattattgtaatt-gttctaatgtataatggtatgttgc---cagGGTTTGGACTTGCCTCACGGAGGACATTTGTCTCATGGATTCATGACACCCAAAAAACGTGTATCAGCCACATCAATTTATTTTGAATCTATGCCTTATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724687|gb|EE100735.1|EE100735
EST:     CTAACTTTGAAGTTTACACTGCCCTTCTTAATCCACATGACAGAATCATG                         GGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT
genomic: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGgtaagttgtt ... ccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT
EST: gi|110403131|gb|EC964343.1|EC964343
EST:     CAATCCACATGACAGAATCATG                         GGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT
genomic: CAATCCACATGACAGAATCATGgtaagttgtt ... ccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT
EST: gi|161715305|gb|FC068028.1|FC068028
EST:     CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATG                         GGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCA
genomic: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGgtaagttgtt ... ccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCA
EST: gi|32269544|gb|CD718703.1|CD718703
EST:     CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATG                         GGCTTGGACTTACCTCAT
genomic: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGgtaagttgtt ... ccatacttagGGCTTGGACTTACCTCAT
EST: gi|110378905|gb|EC944062.1|EC944062
EST:     CTAACTTTGAAGTTTACACTGCCCTTCTTAATCCACATGACAGAATCATG                         GGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT
genomic: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGgtaagttgtt ... ccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT
EST: gi|71862785|gb|DT011840.1|DT011840
EST:     CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATG                         GGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT
genomic: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGgtaagttgtt ... ccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattgttttggattgtattgatccgcactaatcacacttgtaaaccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCTAAAAGACGGGTATCAGGCACATCAATTTATTTTGAGTCTATGCCTTATC
                          cactaat  putative branch site (score: 2)
            attgtatt  TA-rich tract