Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgtaactgtgtaaatcccagaagcttctcttgagttcaccctgaagtctgtgtgcacacttttgtggatttccatgtaacttgtctagagtttgtaggggaaccttgaaaaattgcttcatggaacctacctttaccctgcatttacatactgcaaagttatattgttacagAGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTGAAAGGCGCACGGCAGATTTCTTGTGGATGATGATATTTGGAGCTCTGACATTGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g00510.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os05g09550.3 (Oryza sativa), 3'ss of exon 2
gtaagtgtaactgtgtaaatcccagaagcttctcttgagttcaccctgaagtctgtgtgcacacttttgtggatttccatgtaacttgtctagagtttgtaggggaaccttgaaaaattgcttcatggaacctacctttaccctgcatttacatactgcaaagttatattgttacagAGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTGAAAGGCGCACGGCAGATTTCTTGTGGATGATGATATTTGGAGCTCTGACATTGCTG
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--------------------------------------------------------------------gtaagtcttgttgaaatcaattgtgtgtttgaaagcatgc------agagtattacaataagtaaacttgcagccattggttgaatcaattgtgtgtttgggcatgcagAGCAAGATACGGCGTGCAGTTAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTG
upper sequence: Vv04s0008g00510.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G143817_T01 (Zea mays), 3'ss of exon 3
gtaagtgtaactgtgtaaatcccagaagcttctcttgagttcaccctgaagtctgtgtgcacacttttgtggatttccatgtaacttgtctagagtttgtaggggaaccttgaaaaattgcttcatggaacctacctttaccctgcatttacatactgcaaagttatattgttacagAGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTGAAAGGCGCACGGCAGATTTCTTGTGGATGATGATATTTGGAGCTCTGACATTGCTG
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--------------------------------------------------------------------------gtaagtgaaagtttttctgaacaccgatgataaaatatggttacttccacagtatatataattttaaatcaggttggggtttttgaaatttct-ttgc-atagAGCAAGGTATGGTGTCATGTTGGAAAAGGGAGCATTTGATAAACGGACTGCAGATTTCTTGTGGATGATGATATTTGGTGCCATCTCACTATTG
upper sequence: Vv04s0008g00510.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G117388_T01 (Zea mays), 3'ss of exon 3
gtaagtgtaactgtgtaaatcccagaagcttctcttgagttcaccctgaagtctgtgtgcacacttttgtggatttccatgtaacttgtctagagtttgtaggggaaccttgaaaaattgcttcatggaacctacctttaccctgcatttacatactgcaaagttatattgt-tacagAGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTGAAAGGCGCACGGCAGATTTCTTGTGGATGATGATATTTGGAGCTCTGACATTGCTG
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----------------------------------------------------------gtagg---ttaaagttttgctgactactgattataaaatagt--gacagttatgaactatctataattgtaaattagctttggt-tgtttggatttgctttatcgtgttttggcatgcagAGCAAGGTATGGTGTCATGTTGGAAAAGGGTGCATTTGATAAGCGGACTGCAGATTTCTTATGGATGATGATATTTGGTGCCATCTCACTATTG
upper sequence: Vv04s0008g00510.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G35990.1 (Glycine max), 3'ss of exon 3
gtaagtgtaactgtgtaaatcccagaagcttctcttgagttcaccctgaagtctgtgtgcacacttttgtggatttccatgtaacttgtctagagtttgtaggggaaccttgaaaaattgcttcatggaacctacctttaccctgcatttacatactgcaaagttatat-tgttacagAGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTGAAAGGCGCACGGCAGATTTCTTGTGGATGATGATATTTGGAGCTCTGACATTGCTG
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--------------------------------------------------------------------------------gtaagtaattcaaggataatgtatgcaactacaatctctgttttcttgcatat-taaacaagaagcttatataaattaataattcttaaattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGACCGACGGACTGCTGATTTCTTGTGGATGATGATATTTGGTGCCTTTGCACTATTG
upper sequence: Vv04s0008g00510.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G03630.1 (Glycine max), 3'ss of exon 3
gtaagtgtaactgtgtaaatcccagaagcttctcttgagttcaccctgaagtctgtgtgcacacttttgtggatttccatgtaacttgtctagagtttgtaggggaaccttgaaaaattgctt-catggaacctacctttaccctgcatttacatactgcaaagttatattgttacagAGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTGAAAGGCGCACGGCAGATTTCTTGTGGATGATGATATTTGGAGCTCTGACATTGCTG
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--------------------------------------------------------------------------------gtaagtaattcaaggataatgtatgcaacaacaatctctgctttcttgcatattgaacaagaagtttatataaatgaattaattcttaaattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGCTGATTTCTTGTGGATGATGATATTTGGTGCCTTTGCACTATTG
upper sequence: Vv04s0008g00510.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G29330.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtgtaactgtgtaaatcccagaagcttctcttgagttcaccctgaagtctgtgtgcacacttttgtggatttccatgtaacttgtctagagtttgtaggggaaccttgaaaaattgcttcatggaacctacctttaccctgcatttacatactgcaaagttatattgttacagAGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTGAAAGGCGCACGGCAGATTTCTTGTGGATGATGATATTTGGAGCTCTGACATTGCTG
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------------------------------------------------------------------------gtgagcatactattttcacata---tatagatgaac----aaagctaatttcg--------atttttat--tatcttaacatactcttttaaatgattgt-gcagAGCAAGATATGGAGTTCAACTCGAGAAAGGGCCATTTGAAAGGCGGACAGCAGACTTTTTGTGGATGATGATCTTTGGATCCTTCACTCTATTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351014293|gb|FQ437295.1|FQ437295EST: NNNNNCCTTGGAAAATTTTCAATCAATTTTGGAATTCGCCTCTTAATGAT AGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTTAAAGGCGCACGGC
genomic: TTTTTCCTTGGAAAATTTTCAATCAATTTTGGAATTCGCCTCTTAATGATgtaagtgtaa ... attgttacagAGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTGAAAGGCGCACGGC
EST:
gi|161721005|gb|FC069627.1|FC069627EST: NNNNNCCTTGGAAAATTTTCAATCAATTTTGGAATTCGCCTCTTAATGAT AGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTGAAAGGCGCACGGC
genomic: TTTTTCCTTGGAAAATTTTCAATCAATTTTGGAATTCGCCTCTTAATGATgtaagtgtaa ... attgttacagAGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTGAAAGGCGCACGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatggaacctacctttaccctgcatttacatactgcaaagttatattgttacagAGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTGAAAGGCGCACGGCAGATTTCTTGTGGATGATGATATTTGGAGCTCTGACATTGCTG
aaagttatattgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtgtaactgtgtaaatcccagaagcttctcttgagttcaccctgaagtctgtgtgcacacttttgtggatttccatgtaacttgtctagagtttgtaggggaaccttgaaaaattgcttcatggaacctacctttaccctgcatttacatactgcaaagttatattgttacagAGCCAGATATGGGGTCCAGCTGGAGAAGGGAGTATTTGAAAGGCGCACGGCAGATTTCTTGTGGATGATGATATTTGGAGCTCTGACATTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT