Sequence
atgc intronic sequence ATGC exonic sequence...ttctgtactggtccgagaacataaattctatagttcacattttttcatttgttattaggtcttttgtggttactgtttggttgcattaaaaattttatagGATACAATGGCCAGAAGACCTACAGATCCAGAAGAACAGCTCCGATGGATGTCTCAAGCAGTGCGTGGTTATGTTCAAGCTGTTCTGAATAGCCTTGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0110g00120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM5G870253_T01 (Zea mays), 3'ss of exon 2
ttctgtactggtccgagaacataa-attctatagttcacattttttcatttgttattaggtcttttgtggttactgtttggttgcattaaaaattttatagGATACAATGGCCAGAAGACCTACAGATCCAGAAGAACAGCTCCGATGGATGTCTCAAGCAGTGCGTGGTTATGTTCAAGCTGTTCTGAATAGCCTTGCTG
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ttttatcttacctaaaggctaaagcatgttttcatttaaatgtatccaaacacaagatcacttattttactcttcattctacaactcttttctgttta-agGATACAATGGCTCGGAGGCCTGCTGATCCTGAAGAAGAACTTCGATGGATGTCTCAAGAAGTCCGTGGTTATGTTGAAGCTGTTTTGAACAGTTTGGCTG
upper sequence: Vv03s0110g00120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM5G811223_T01 (Zea mays), 3'ss of exon 6
---------------------------------------------------------------------ttctgtactggtccgagaacataaattctatagtt-cacattttttcatttgttattaggtcttt---tgtggttactgtttggttgca---------ttaaaaattttat---------------agGATACAATGGCCAGAAGACCTACAGATCCAGAAGAACAGCTCCGATGGATGTCTCAAGCAGTGCGTGGTTATGTTCAAGCTGTTCTGAATAGCCTTGCTG
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gtaagttctaggttaatacataattgaattgcatttctagctttccttttgtagttttgctttactcaattaaatcttgatttattagggatcatcatgtaatttcaggttcccttgtatgtt-ttggatgtgccaatataaatactgctccattaaaatacacaaactaaacatctgatcatacacttttcgaaagGATGCTATGGCGCGGAGACCAGCTGATCCTGAAGAAGAACTTAGATGGATGTCTCAAGAAGTTCGTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAG
upper sequence: Vv03s0110g00120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G157462_T01 (Zea mays), 3'ss of exon 18
---------------------------------------------------------------------------------------------ttctgta----ctggtccgagaacataaattctatagttcacattttttcatttgttattaggtcttttgtggttactgtttggttgcattaaaaattttatagGATACAATGGCCAGAAGACCTACAGATCCAGAAGAACAGCTCCGATGGATGTCTCAAGCAGTGCGTGGTTATGTTCAAGCTGTTCTGAATAGCCTTGCTG
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gtaagttctagattaatacataattgtattgcatttctagctttcttttgtcgttttgctctactcaactaaatcatgatttattaaggatcatcatgtaatttcaggtccccttgtatattttggatgtgccaatataaatatttttccattaaaatacaca-aactaacatctgaccatac--atttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATGTCTCAAGAAGTTCGTGGTTATGTCGAGGCTGTTTTGAATAGTCTGGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catttgttattaggtcttttgtggttactgtttggttgcattaaaaattttatagGATACAATGGCCAGAAGACCTACAGATCCAGAAGAACAGCTCCGATGGATGTCTCAAGCAGTGCGTGGTTATGTTCAAGCTGTTCTGAATAGCCTTGCTG
ttgcattaaaaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctgtactggtccgagaacataaattctatagttcacattttttcatttgttattaggtcttttgtggttactgtttggttgcattaaaaattttatagGATACAATGGCCAGAAGACCTACAGATCCAGAAGAACAGCTCCGATGGATGTCTCAAGCAGTGCGTGGTTATGTTCAAGCTGTTCTGAATAGCCTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - acataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg