1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tataagtctgtaagtcttcaaatataagcctataactattttggccccaaatatccttaaaattgtatgtcctttccttgattatcaattttgtgggcagGGAATGGGAGAACCTCTGAATAACTATTCTGCCTTAGTGGAAGCTATCCATATCATGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTGTAT
species | Vitis vinifera |
transcript | Vv03s0091g00820.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATTAGTGCATGCTTCTCACTTTTCGCAAATACGGAATGTTGTGTTCATG GGAAATGGGAGAACCTCTGAATAACTATTCTGCCTTAGTGGAAGCEST: gi|34543445|gb|CF511677.1|CF511677
genomic: AATTAGTGCATGCTTCTCACTTTTCGCAAATACGGAATGTTGTGTTCATGgtaatgacct ... ttgtgggcagGGAA-TGGGAGAACCTCTGAATAACTATTCTGCCTTAGTGGAAGC
EST: AATTAGTGCATGCTTCTCACTTTTCGCAAATACGGAATGTTGTGTTCATG GGAATGGGAGAACCACTGAATAACTATTCTGCCTTAGTGGAAGCTATCCATEST: gi|71854828|gb|DT003883.1|DT003883
genomic: AATTAGTGCATGCTTCTCACTTTTCGCAAATACGGAATGTTGTGTTCATGgtaatgacct ... ttgtgggcagGGAATGGGAGAACCTCTGAATAACTATTCTGCCTTAGTGGAAGCTATCCAT
EST: AATTAGTGCATGCTTCTCACTTTTCGCAAATACGGAATGTTGTGTTCATG GGAATGGGAGAACCACTGAATAACTATTCTGCCTTAGTGGAAGCTATCCAT
genomic: AATTAGTGCATGCTTCTCACTTTTCGCAAATACGGAATGTTGTGTTCATGgtaatgacct ... ttgtgggcagGGAATGGGAGAACCTCTGAATAACTATTCTGCCTTAGTGGAAGCTATCCAT
cccaaatatccttaaaattgtatgtcctttccttgattatcaattttgtgggcagGGAATGGGAGAACCTCTGAATAACTATTCTGCCTTAGTGGAAGCTATCCATATCATGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTGTAT
ccttgat putative branch site (score: 5)
ttgattatcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataagtctgtaagtcttcaaatataagcctataactattttggccccaaatatccttaaaattgtatgtcctttccttgattatcaattttgtgggcagGGAATGGGAGAACCTCTGAATAACTATTCTGCCTTAGTGGAAGCTATCCATATCATGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - -aaatata
- - - - - - - - - - - - - - - - - - - - - - ccccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cttaaaa