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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcattctctctctttgtttatcctgtgctctgggtattggctaggaacttccctatttctcttgccatattccttcgatttgattagttgccttgatattttttttcccctctaattttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGATTTTGACAACCCCTCAAAGCCTATATATCTCTACATAAATTCAACTGGAA

Basic information

species Vitis vinifera
transcript Vv03s0091g00700.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0091g00700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G49970.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtcattctctctctttgtttatcctgtgctctgggtattggctaggaacttccctatttctcttgccatatt--ccttcgatttgattagttgccttgatattttttttcccctctaattttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGATTTTGACAACCCCTCAAAGCCTATATATCTCTACATAAATTCAACTGGAA
                 |  |    || ||||    |   | | | ||  ||   |  | | | |  | |  | ||  |  ||   ||   || | |   |      ||||    | | |  ||   |||||||||||||||||||  ||||| | || |||||||| ||||||||||| || | ||| |||||  ||||||| || ||  | || ||||||||| | || |
----------------gtaagaccttcatgtgtc--gataacttgttactaaacccatt-tctttgctactgtgtttgctctctgcttagctattggatctagctcattttgcttcattt--ttacttgcagATCGTACCTGCAGTTACTGAGTTACTCGTTGCTCAATTTATGTGGTTAGACTATGATAACCCAACAAAGCCCATCTACTTATATATAAATTCACCCGGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110396404|gb|EC962089.1|EC962089
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|110713462|gb|EE089402.1|EE089402
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|26267312|gb|CA818375.1|CA818375
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|110686908|gb|EE063865.1|EE063865
EST:     ATTTGCCGTCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|28968092|gb|CB347125.1|CB347125
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|110391380|gb|EC956351.1|EC956351
EST:     CTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: CTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|26257375|gb|CA808438.1|CA808438
EST:     ATTTGCCATCTCTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGAAGCTGAGCTTCTTTGTTGCTCCAGTTTATGTGGTT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTT-GTTGCTC-AGTTTATGTGGTT
EST: gi|351025662|gb|FQ426676.1|FQ426676
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|351030338|gb|FQ432276.1|FQ432276
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|22007314|gb|BQ792348.1|BQ792348
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|71866707|gb|DT015762.1|DT015762
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|110710998|gb|EE087695.1|EE087695
EST:     ATTTGCCGTCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|27578583|gb|CB001278.1|CB001278
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|26257779|gb|CA808842.1|CA808842
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|352795065|gb|FQ477175.1|FQ477175
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGCAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|110685602|gb|EE062466.1|EE062466
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|26264973|gb|CA816036.1|CA816036
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|26258048|gb|CA809111.1|CA809111
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCGGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|26267206|gb|CA818269.1|CA818269
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGATTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|18458865|gb|BM437143.1|BM437143
EST:     ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: ATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
EST: gi|110395310|gb|EC960968.1|EC960968
EST:     CTGGGCATGCCA                         ATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT
genomic: CTGGGCATGCCAgtaagtcatt ... ttttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttcgatttgattagttgccttgatattttttttcccctctaattttctgcagATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGATTTTGACAACCCCTCAAAGCCTATATATCTCTACATAAATTCAACTGGAA
                                       ctctaat  putative branch site (score: 3)
                          tattttttttcccctc  CT-rich tract
                      ttgatatttttttt  TA-rich tract