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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtttccatatcagtgcctcatttcttgcagtaatataaaatgtttctattaatagcagtttaattctgaaataaacaggttgaaatcctttctaagcctagttagaatctattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGC

Basic information

species Vitis vinifera
transcript Vv03s0091g00100.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0091g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os04g57400.1 (Oryza sativa), 3'ss of exon 3
gtactgtttccatatcagtgcctcatttcttgcagtaatataaaatgtttctattaatagcagtttaattctgaaataaacaggttgaaatcctttctaagcctagttagaatctattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGC
                                      ||   |   || |   | | | |||     ||||    |   ||  ||| |     |  |   | |  || | || |     |||||||   ||||||| | || || ||  | ||||||||||| || ||||||||  | ||||| || || ||||| |||||||| || |||||||||||||  
-------------------------------------gtaactatctttccagattaaaccagcgcttttcttttcttttcatattggaga---tgatggacatgatttgcatat-----gcagGTTTATTGAGAGAGCACAGGCTCTTCTTCATGGAGATCTCCACACTGGTTCCATCATGGTGACACCAGATTCTACTCAAGTGATTGATCCAGAATTTGCT

upper sequence: Vv03s0091g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G40730.1 (Glycine max), 3'ss of exon 3
gtactgtttccatatcagtgcctcatttcttgcagtaatataaaatgtttctattaatagcagtttaattctgaaataaacaggttgaaatcctttctaagcctagttagaatctattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGC
                                  ||| ||| |     || | ||  || |  ||  || | | | |      |||  | |  ||  | |    | ||    |   |  || ||||||  ||||||  | || || ||| ||||||||||||| || |||||||| || |||||||||| ||| || ||||||||||| |||||||||||||  
----------------------------------gtattattactcacttttttt--tacccattatatgcagtagttttgttgttagattttttctttataggaatttatgt---tcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCTGTGATGGTTACCCGTGAATCAACTCAAGTTATTGATCCAGAATTTGCA

upper sequence: Vv03s0091g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G26580.1 (Glycine max), 3'ss of exon 3
gtactgtttccatatcagtgcctcatttcttgcagtaatataaaatgtttctattaatagcagtttaattctgaaataaacaggttgaaatcctttctaagcctagttagaatctattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGC
                                  ||| | |    | | | | ||  || |  ||  || ||| | |      |||  | |  ||  | |    | ||        |  || ||||||  ||||||  | || || ||| ||||||||||||| || |||||||| || |||||||| | ||| || ||||||||||| |||||||||||||  
----------------------------------gtattgtggc-tctctttgtttttacccattatatgctgtagtttcgttgttagattttttctttataggaatttatg---gtcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCTGTGATGGTTACTCGTGAATCAACTCAAGTTATTGATCCAGAATTTGCA

upper sequence: Vv03s0091g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G49820.1 (Arabidopsis thaliana), 3'ss of exon 3
gtactgtttccatatcagtgcctcatttcttgcagtaatataaaatgtttctattaatagcagtttaattctgaaataaacaggttgaaatcctttctaagcctagttagaatctattttgc-agGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGC
                                            |||| | |  | ||  |    |||||         |   | |   |||  |   || |    ||      ||| |||  ||||||||||| ||| | |||||  || ||||||| ||||||||||||||||| || |||||||| |  ||||| || ||||||||||||||||| |||   
------------------------------------------gtatgtgttttctcatttcccggtaatttccgctaggatttgctagtatctctg--aaccaccattgtgtattatgttgttagGTTCTGTGAAAGAGCTCAAGCTTTAATACATGGTGATCTTCATACTGGTTCTGTCATGGTTACTCAAGATTCAACGCAAGTTATAGATCCAGAGTTTTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351053951|gb|FQ441717.1|FQ441717
EST:     TTCGAGAGGATAACATTTTTGA-GCTTGAAGTGGCTGAGTTGAAATTTAT                         GTTCTGTGAGAGATCGCAAGCCCTAGTA
genomic: TTCGAGAGGATAACATTTT-GAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTA
EST: gi|352795531|gb|FQ480119.1|FQ480119
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATTTAT                         GTTCTGTGAGAGATCGCAAGCCCTAGTACATG
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATG
EST: gi|351015716|gb|FQ431671.1|FQ431671
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATTTAT                         GTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: gi|352798346|gb|FQ480371.1|FQ480371
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAATT-TAT                         GTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: gi|351052499|gb|FQ456347.1|FQ456347
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATTTAT                         GTTCTGTGAGAGATCGCAA
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAA
EST: gi|351049584|gb|FQ429206.1|FQ429206
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTAT                         GTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: gi|351026100|gb|FQ428112.1|FQ428112
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAATTTGCTGAGTTGAAATTTAT                         GTTCTGTGAGAGATCGCAAGCCCTAATACATGGAG
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAG
EST: gi|351016539|gb|FQ423966.1|FQ423966
EST:     GTTCAAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTAT                         GTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaaataaacaggttgaaatcctttctaagcctagttagaatctattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGC
                                           tctatttt  CT-rich tract
                                     ttagaatctatttt  TA-rich tract