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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgcttccatatcagtacctcatttctttacgtaatataaaatatttctattaatagcagtttaattctgaagtaaacaggttgaaatcctttctatgcctagttagaatctattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGA

Basic information

species Vitis vinifera
transcript Vv03s0091g00080.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0091g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os04g57400.1 (Oryza sativa), 3'ss of exon 3
gtagtgcttccatatcagtacctcatttctttacgtaatataaaatatttctattaatagcagtttaattctgaagtaaacaggttgaaatcctttctatgcctagttagaatctattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGA
                                      ||   |   || |   | | | |||     ||||    |   ||  ||| |         |||        || |    | ||||||||   ||||||| |||| || ||  | ||||||||||| || ||||||||  | ||||| || || ||||| |||||||| || |||||||||||||  
-------------------------------------gtaactatctttccagattaaaccagcgcttttcttttcttttcatattggag--------atgatggacatgatttgcatatgcagGTTTATTGAGAGAGCACAGGCTCTTCTTCATGGAGATCTCCACACTGGTTCCATCATGGTGACACCAGATTCTACTCAAGTGATTGATCCAGAATTTGCT

upper sequence: Vv03s0091g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G40730.1 (Glycine max), 3'ss of exon 3
gtagtgcttccatatcagtacctcatttctttacgtaatataaaatatttctattaatagcagtttaattctgaagtaaacaggttgaaatcctttctatgcctagttagaatctattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGA
                                  ||| ||| |   | || | || |   || | ||    || ||||     ||||  |   ||| | |   |||  |       |  || ||||||  ||||||  | || || ||| ||||||||||||| || |||||||| || |||||||||| ||| || ||||||||||| ||||||||||||| |
----------------------------------gtattattactcacttttttttacc-cattata----tgcagtagttttgttgttagattttttctttataggaatttatgttcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCTGTGATGGTTACCCGTGAATCAACTCAAGTTATTGATCCAGAATTTGCA

upper sequence: Vv03s0091g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G26580.1 (Glycine max), 3'ss of exon 3
gtagtgcttccatatcagtacctcatttctttacgtaatataaaatatttctattaatagcagtttaattctgaagtaaacaggttgaaatcctttctatgcctagttagaatctattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGA
                                  ||| | |    | | | | ||  || |  ||  || ||| |||      ||| | ||  ||||| |   |||  |       |  || ||||||  ||||||  | || || ||| ||||||||||||| || |||||||| || |||||||| | ||| || ||||||||||| ||||||||||||| |
----------------------------------gtattgtggc-tctctttgtttttacccattatatgctgtagtttcgttgtt-agattttttcttta--taggaatttatggtcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCTGTGATGGTTACTCGTGAATCAACTCAAGTTATTGATCCAGAATTTGCA

upper sequence: Vv03s0091g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G49820.1 (Arabidopsis thaliana), 3'ss of exon 3
gtagtgcttccatatcagtacctcatttctttacgtaatataaaatatttctattaatagcagtttaattctgaagtaaacaggttgaaatcctttctatgcctagttagaatctattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGA
                                            || | | |  | ||  |    |||||         |   | |   |||  |      ||    |  | | | || |  ||||||||||| ||| | |||||  || ||||||| ||||||||||||||||| || |||||||| |  ||||| || ||||||||||||||||| |||   
------------------------------------------gtatgtgttttctcatttcccggtaatttccgctaggatttgctagtatctctgaaccaccattgtgtattatgttgt-tagGTTCTGTGAAAGAGCTCAAGCTTTAATACATGGTGATCTTCATACTGGTTCTGTCATGGTTACTCAAGATTCAACGCAAGTTATAGATCCAGAGTTTTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714716|gb|FC064488.1|FC064488
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTAT                         GTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATAC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTATgtagtgcttc ... tattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATAC
EST: gi|30324984|gb|CD008246.1|CD008246
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTAT                         GTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTATgtagtgcttc ... tattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: gi|32248279|gb|CD714098.1|CD714098
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTAT                         GTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTATgtagtgcttc ... tattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: gi|110727535|gb|EE104406.1|EE104406
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTAT                         GTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTATgtagtgcttc ... tattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: gi|33403054|gb|CF208681.1|CF208681
EST:     AGCTTGAAGTTGCCGAGTTGAAATCTAT                         GTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: AGCTTGAAGTTGCCGAGTTGAAATCTATgtagtgcttc ... tattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: gi|32269752|gb|CD718911.1|CD718911
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTAT                         GTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTATgtagtgcttc ... tattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: gi|33402966|gb|CF208593.1|CF208593
EST:     GTTCGAGAGGATAACATTCTGAAGCTTGAAGTTGCCGAGTTGAAATCTAT                         GTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTATgtagtgcttc ... tattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: gi|30326383|gb|CD009645.1|CD009645
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTAT                         GTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTATgtagtgcttc ... tattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: gi|32247178|gb|CD712997.1|CD712997
EST:     GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTAT                         GTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCCGAGTTGAAATCTATgtagtgcttc ... tattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaagtaaacaggttgaaatcctttctatgcctagttagaatctattttgcagGTTCTGTGAGAGATCACAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGA
                                           tctatttt  CT-rich tract
                                     ttagaatctatttt  TA-rich tract